Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq5 96.9 4e-15 seq4 93.3 5e-14 >seq6 Length=59463898 Score = 107 bits (118), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||||||||| | || ||| ||||| || ||||||||||| || || ||| | Sbjct 17161432 ACGGAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCAAGGGTACGCCC 17161373 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || || || ||||| ||||||||||| | || | || ||||| Sbjct 17161372 ATCCTCCAGCTGCTTGCCTGCAAAAATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTT 17161313 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 43143 || | ||| | || | | | | | | | | || || ||| || || |||| | Sbjct 17161312 GT-CTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTC---TCAACTTCGAGAG 17161257 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||||||||| || || ||||| ||||| |||||||| Sbjct 17161256 TGATGGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 17161217 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| || || || || | |||||||| | ||| |||||||| |||||||||||||| Sbjct 20997746 TCCGCCCCTCAATCGAAGTACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAATCAGC 20997687 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || | || || | |||||||| ||||| || || | |||||| || | || Sbjct 20997686 TAGGGTGCGACCATCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCAGGAGG 20997627 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| |||||| ||| || ||||| | | | ||| || ||||| || Sbjct 20997626 GATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTATCAATCGTATCAGAAGATTCAAC 20997567 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| || ||||| || || || | ||||| ||||| |||||||| Sbjct 20997566 CTCGAGGGTAATGGTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCAT 20997519 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/215 (71%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||||||| | ||| || || |||||||||||||| || | ||| || | || || Sbjct 17161654 CACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAATCTGCTAAAGTTCGGCCATCCTC 17161595 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 ||||| || ||||| || ||||| | ||| ||||| | || | ||||||||||||| | Sbjct 17161594 AAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGAATGCTCTCCTTGTCC-T 17161536 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || | || | |||| | | | || || ||| |||||| || | ||||| | Sbjct 17161535 GAATCTTGGCCTTGACATTGTCAATAGTATCAGAGCT---TTCCACCTCAAGGGTGATCG 17161479 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || || || || ||||| || |||||||||||| Sbjct 17161478 TCTTTCCAGTGAGAGTCTTCACGAAGATTTGCATT 17161444 Score = 86.0 bits (94), Expect = 7e-12 Identities = 151/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 |||||| || | ||| | || |||||||||||| |||||||| |||| || || | Sbjct 17146330 ACGCAAAACAAGATGGAGAGTTGACTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGTCC 17146271 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| ||||| || || | | |||||||| | || | || ||| || Sbjct 17146270 ATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGAATGCCCTCTTT 17146211 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCGT 43144 ||| || ||| |||| | | | ||||| ||| || || || | || Sbjct 17146210 GTCTTGTATCTTTGCCTTGACATTGTCTATGGTGTCAGAACTC---TCTACCTCAAGTGT 17146154 Query 43145 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || || || ||||| |||||||||||||| Sbjct 17146153 GATGGTCTTTCCTGTGAGGGTCTTGACAAAGATTTGCAT 17146115 Score = 84.2 bits (92), Expect = 3e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||||||||| | | ||||||||| || | ||| |||||||| || || ||||| || Sbjct 24381206 TCCTCCTCTGAGCCTCAACACCAAGTGAAGTGTTGATTCCTTTTGTATGTTATAATCTGC 24381265 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || | || || |||||||||||||| || || | | ||||||||| | || Sbjct 24381266 AAGAGTGCGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGG 24381325 Query 43076 CACGCTCTCCTTGTCC 43091 | | ||||||||| Sbjct 24381326 GATACCTTCCTTGTCC 24381341 Score = 82.4 bits (90), Expect = 9e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| || || | ||| ||||| | ||| || ||||| || ||||||||||| Sbjct 20997289 CCACCTCTCAACCGAAGCACTAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGCA 20997230 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || |||| || ||||| ||||| || |||| || || || | || Sbjct 20997229 AGGGTACGGCCATCTTCTAATTGTTTACCGGCGAAGATAAGTCTTTGTTGATCTGGTGGG 20997170 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 43132 | | |||||||| ||| || ||| | ||| | | | || ||| ||| || Sbjct 20997169 ATCCCTTCCTTGTCTTGGATCTTAGCTTTCA-CGTTGTCTATGGTATCGGAACTC---TC 20997114 Query 43133 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| || | |||||||||||||| || | || || || ||||||||||| Sbjct 20997113 CACCTCAAGGGTGATGGTTTTGCCGGTCAATGTTTTCACGAAGATTTGCAT 20997063 >seq5 Length=48169137 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||||||| | || |||||||| ||||||||||| ||||| |||| |||| || Sbjct 36920719 CACCAAATGAAGCGTTGATTCCTTTTGGATATTGTAATCCGCCAGTGTCCTTCCGTCTTC 36920660 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || || || || ||||| || | ||| |||||||| | || | | |||||||| | | Sbjct 36920659 TAATTGTTTTCCGGCGAAGATCAATCGTTGCTGGTCTGGAGGAATACCCTCCTTGT-CTT 36920601 Query 43094 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGG 43149 || |||||| | ||| | | | || ||| ||| || || || | || |||| Sbjct 36920600 GAATTTTTGCCTTCACGTTGTCGATTGTATCGGAACTC---TCTACCTCTAGGGTAATGG 36920544 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| ||||| || || || ||||| ||||| Sbjct 36920543 TTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 36920510 >seq4 Length=49191682 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||| || |||||||| ||||| || || || | | |||| |||| ||| || || ||||| Sbjct 19846664 CTCTTTCTGAATATTATAATCTGCAAGTGTTCTCCCGTCTTCTAACTGTTTTCCGGCGAA 19846723 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||| || | || | | || ||||| |||||| ||| | ||| Sbjct 19846724 GATCAACCGCTGCTGATCCGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTCA-CGT 19846782 Query 43112 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| ||||| || || | ||| ||||||||||| ||||| || || | Sbjct 19846783 TGTCGATTGTGTCGGAGGATTCTACTTCTAGCGTTATGGTTTTGCCGGTTAGGGTTTTGA 19846842 Query 43171 CAAAGATTTGCAT 43183 | ||||| ||||| Sbjct 19846843 CGAAGATCTGCAT 19846855 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/196 (70%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||| |||||||| ||||| || | || || || || |||||||| || Sbjct 19846437 TCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAA 19846496 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || || ||||| || || | || | | |||||| || ||| | || | ||| | | Sbjct 19846497 ATAAGACGCTGTTGATCCGGTGGAATTCCCTCCTTATCT-TGAATCTTCGCTTTCACATT 19846555 Query 43112 CGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 43168 | | ||| || ||| ||||| || | || || || || |||||||||||||| Sbjct 19846556 ATCAATCGTATCAGAACTC---TCCACCTCCAAAGTAATCGTCTTCCCCGTTAGCGTCTT 19846612 Query 43169 TACAAAGATTTGCATT 43184 ||||| || |||||| Sbjct 19846613 CACAAAAATCTGCATT 19846628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571766658199560