Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq4 107 3e-18 seq6 95.1 2e-14 seq5 93.3 6e-14 >seq4 Length=49191682 Score = 107 bits (118), Expect = 3e-18 Identities = 107/139 (77%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| | || || | || | ||| | ||||| ||||| ||||||||||||| Sbjct 19846627 TTCCACCACGGAGCCTAAGAACAAGATGAAGCGTAGACTCTTTCTGAATATTATAATCTG 19846686 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| ||||| | || ||||| |||||||| || || ||||| | ||||||||||| | Sbjct 19846687 CAAGTGTTCTCCCGTCTTCTAACTGTTTTCCGGCGAAGATCAACCGCTGCTGATCCGGTG 19846746 Query 146169 GAATTCCTTCTTTATCTTG 146187 ||||||||||||| ||||| Sbjct 19846747 GAATTCCTTCTTTGTCTTG 19846765 Score = 86.0 bits (94), Expect = 9e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 |||||||| || ||||||||||| | |||||| | | ||| || | |||||| ||| Sbjct 19846431 GTAGATTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCA 19846490 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 |||||||| | | || |||||||| |||||||| || |||||||| Sbjct 19846491 GCAAAAATAAGACGCTGTTGATCCGGTGGAATTCCCTCCTTATCTTG 19846537 >seq6 Length=59463898 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || || ||||| || ||||||||||| || ||||||||||| | Sbjct 20998429 CCACCACGAAGCCTCAAAACCAAGTGCAAAGTAGATTCCTTCTGGATATTATAATCAGCC 20998370 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||| | | ||| || || || || || |||||||| | || |||||||| |||||| Sbjct 20998369 AGAGTACGTCCATCCTCCAACTGCTTGCCGGCAAAAATTAGCCTCTGCTGATCTGGAGGA 20998310 Query 146171 ATTCCTTCTTTATCTTG 146187 || || ||||| || || Sbjct 20998309 ATACCCTCTTTGTCCTG 20998293 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| ||||| || || || ||||| || | || ||||| || ||| ||||||||| Sbjct 24381204 GTTCCTCCTCTGAGCCTCAACACCAAGTGAAGTGTTGATTCCTTTTGTATGTTATAATCT 24381263 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | | ||| || | || || |||||||||||||| || ||||| || ||| Sbjct 24381264 GCAAGAGTGCGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGA 24381323 Query 146168 GGAATTCCTTCTTTATC 146184 || || ||||| || || Sbjct 24381324 GGGATACCTTCCTTGTC 24381340 >seq5 Length=48169137 Score = 93.3 bits (102), Expect = 6e-14 Identities = 152/227 (67%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || || | ||||| | |||||||| | || ||||| || ||||| ||||| | Sbjct 36920736 CCGCCGCGAAGTCGAAGCACCAAATGAAGCGTTGATTCCTTTTGGATATTGTAATCCGCC 36920677 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || || | || |||||||||||||| || || ||||||| |||||| || |||||| Sbjct 36920676 AGTGTCCTTCCGTCTTCTAATTGTTTTCCGGCGAAGATCAATCGTTGCTGGTCTGGAGGA 36920617 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || || || ||||| ||||| ||||| ||||| Sbjct 36920616 ATACCCTCCTTGTCTTGAATTTTTGCCTTCACGTTGTCGATTGTATCGGAACTCTCTACC 36920557 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||||| || || ||||| || |||| ||||| | ||| || ||||| Sbjct 36920556 TCTAGGGTAATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 36920510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743460161091840