Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq55 228 8e-55 seq104 116 3e-21 seq7 84.2 2e-11 >seq55 Length=606834 Score = 228 bits (252), Expect = 8e-55 Identities = 578/873 (66%), Gaps = 12/873 (1%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || |||||||| | ||| || || ||||| |||||||| |||| || || || || Sbjct 250543 TTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTCTTCCCTTGAAGAGAAATCAAC 250484 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||||||||| | ||||| | ||||| ||||||| | ||| || Sbjct 250483 TCCATCCAATCAAAAGGATTCTGAACATTATAAACTTTCCCACAACCAAGCTCACCCAAC 250424 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 || ||||| || ||||| || |||||||| ||| ||| || |||||| || | | Sbjct 250423 AACCTATCGGCAACGAACTCAATATACTGGCTCATCAAATCACCATTCATCCCGACCAAC 250364 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | ||||| || | | ||||||| | || || | |||||||||| | | ||| Sbjct 250363 GCGCACGGAAGCGCGTCACAAACAAACTCCCTCTCAATCTCAACCGCATCACTCACAATC 250304 Query 11579 GACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAA-ACATTAAACACGCAAA 11637 | | | |||| | || || | | ||| | || | | ||||| ||||| Sbjct 250303 TTCTTCACTCGCTCCTCACTCAGTTTAT-TCCTCAATAGTGAATAAAGCAAACAAGCAAA 250245 Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697 ||||||||| | |||||||| | || || || || ||||| ||||| || ||||| Sbjct 250244 ATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 250185 Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757 || || |||||||| | |||||| || ||| || |||||| || || || || || Sbjct 250184 TAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTACCAGAGAAAAAAATACCTTC 250125 Query 11758 CACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTTTCT 11817 || ||||| || || | |||||| || | | | |||||||| Sbjct 250124 AACGCAAGCAAAAGCAACGATTCTTTCAGCAAACGAATCCGACGAATCGATCCATTTCAA 250065 Query 11818 GGCCCAATCAGCTTTCTTTTTTACGCATTCCA----TTGTTTCTATAGCGTTAAATAAAT 11873 |||||||| |||||||| ||| || | | | || || ||||| | ||| ||| Sbjct 250064 AGCCCAATCCGCTTTCTT----ACGAATACAAGGAATCGTCTCAATAGCATGAAACAAAC 250009 Query 11874 GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAAT 11933 | | || || | ||| |||| ||| || || | | | |||||||||||| |||| Sbjct 250008 GATTCTTCTCAACCGAATCGCTTATATACGTTTCAAGAAGGAGACTATACATTTCAGAAT 249949 Query 11934 GAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACAT 11993 | ||||| || || || |||||||| || || ||| || ||||||||| || || | Sbjct 249948 GTATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCGCCTCTGAAACTTGAACTT 249889 Query 11994 C-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 | ||| |||||| | || | |||||| || || || || | || |||||| Sbjct 249888 CTTTCAT-GAATCTTCCAGCAAGATTCTCTAAAACGATGCCGTCGGATGCGGCGAAAAAT 249830 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAA 12112 || || | || || ||||| | |||| | | |||||| || | ||||| | | | Sbjct 249829 GCAAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAATTGTTCCAATGTTGAAGA 249770 Query 12113 TCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATT 12172 |||| ||||||||| |||||||| ||||||| || || | | || ||| |||||| Sbjct 249769 TCTTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACATT 249710 Query 12173 TTCCAGATATCATGATACTTAATAGGGAAAATA 12205 | ||| || | | | || | ||| ||||| ||| Sbjct 249709 TCCCAAATTTTAGGGTATTCAATTGGGAACATA 249677 Score = 228 bits (252), Expect = 8e-55 Identities = 578/873 (66%), Gaps = 12/873 (1%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATAC 11398 || |||||||| | ||| || || ||||| |||||||| |||| || || || || Sbjct 259226 TTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTCTTCCCTTGAAGAGAAATCAAC 259167 Query 11399 TCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAAT 11458 ||||| | ||||||||| | ||||| | ||||| ||||||| | ||| || Sbjct 259166 TCCATCCAATCAAAAGGATTCTGAACATTATAAACTTTCCCACAACCAAGCTCACCCAAC 259107 Query 11459 AATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAGA 11518 || ||||| || ||||| || |||||||| ||| ||| || |||||| || | | Sbjct 259106 AACCTATCGGCAACGAACTCAATATACTGGCTCATCAAATCACCATTCATCCCGACCAAC 259047 Query 11519 TCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTATC 11578 | ||||| || | | ||||||| | || || | |||||||||| | | ||| Sbjct 259046 GCGCACGGAAGCGCGTCACAAACAAACTCCCTCTCAATCTCAACCGCATCACTCACAATC 258987 Query 11579 GACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAA-ACATTAAACACGCAAA 11637 | | | |||| | || || | | ||| | || | | ||||| ||||| Sbjct 258986 TTCTTCACTCGCTCCTCACTCAGTTTAT-TCCTCAATAGTGAATAAAGCAAACAAGCAAA 258928 Query 11638 ATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCAT 11697 ||||||||| | |||||||| | || || || || ||||| ||||| || ||||| Sbjct 258927 ATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 258868 Query 11698 CAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTC 11757 || || |||||||| | |||||| || ||| || |||||| || || || || || Sbjct 258867 TAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTACCAGAGAAAAAAATACCTTC 258808 Query 11758 CACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTTTCT 11817 || ||||| || || | |||||| || | | | |||||||| Sbjct 258807 AACGCAAGCAAAAGCAACGATTCTTTCAGCAAACGAATCCGACGAATCGATCCATTTCAA 258748 Query 11818 GGCCCAATCAGCTTTCTTTTTTACGCATTCCA----TTGTTTCTATAGCGTTAAATAAAT 11873 |||||||| |||||||| ||| || | | | || || ||||| | ||| ||| Sbjct 258747 AGCCCAATCCGCTTTCTT----ACGAATACAAGGAATCGTCTCAATAGCATGAAACAAAC 258692 Query 11874 GCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAAT 11933 | | || || | ||| |||| ||| || || | | | |||||||||||| |||| Sbjct 258691 GATTCTTCTCAACCGAATCGCTTATATACGTTTCAAGAAGGAGACTATACATTTCAGAAT 258632 Query 11934 GAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACAT 11993 | ||||| || || || |||||||| || || ||| || ||||||||| || || | Sbjct 258631 GTATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCGCCTCTGAAACTTGAACTT 258572 Query 11994 C-CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAAT 12052 | ||| |||||| | || | |||||| || || || || | || |||||| Sbjct 258571 CTTTCAT-GAATCTTCCAGCAAGATTCTCTAAAACGATGCCGTCGGATGCGGCGAAAAAT 258513 Query 12053 GCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAA 12112 || || | || || ||||| | |||| | | |||||| || | ||||| | | | Sbjct 258512 GCAAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAATTGTTCCAATGTTGAAGA 258453 Query 12113 TCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATT 12172 |||| ||||||||| |||||||| ||||||| || || | | || ||| |||||| Sbjct 258452 TCTTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACATT 258393 Query 12173 TTCCAGATATCATGATACTTAATAGGGAAAATA 12205 | ||| || | | | || | ||| ||||| ||| Sbjct 258392 TCCCAAATTTTAGGGTATTCAATTGGGAACATA 258360 >seq104 Length=244920 Score = 116 bits (128), Expect = 3e-21 Identities = 246/363 (68%), Gaps = 13/363 (4%) Strand=Plus/Plus Query 11627 AAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTT 11686 ||||| || ||||||||||| | |||||||| | || || || || ||||| ||| Sbjct 172064 AAACAAGCGAAATCACAATGAAGTCCTTCGTCACACAAAATAAGCTCGTTTGAAAAAGTT 172123 Query 11687 AATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAG 11746 || || |||| || || |||||||| | ||||||||| ||| || || ||| || Sbjct 172124 AAACCATGCATTAAACCACGTTTTTTAAGCCAAAATATCGCACATAAACTACTAGAGAAA 172183 Query 11747 AATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGAT 11806 || || || || || ||||| || || | |||||| || | | | | | Sbjct 172184 AAAATACCTTCAACGCAAGCAAAAGCAACGATTCTTTCAACAATCAAATCGACG-AATCG 172242 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTC----CATTGTTTCTATAGC 11862 |||||||| |||||||| |||||| ||||| || | || || || ||||| Sbjct 172243 ATCCATTTCAAAGCCCAATCCGCTTTC----TTACGAATACAAGGAATCGTCTCAATAGC 172298 Query 11863 GTTAAATAAATGCATTTTTTCT--ATATTATCTCTTACATATGTATCTATTAATAAACTA 11920 | ||| ||| || || |||| | ||| |||| |||||| || | | | |||| Sbjct 172299 ATGAAACAAA--CAATTCTTCTCAACCAAATCGCTTATATATGTTTCAAGAAGGAGACTA 172356 Query 11921 TACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCT 11980 |||||||| ||||| ||||| || || || ||||| || | |||||| || || ||| Sbjct 172357 TACATTTCAGAATGTATATTCTCAATCGCGATTTGGAACCTGTAGAAAGCACGCGCTTCT 172416 Query 11981 GAA 11983 ||| Sbjct 172417 GAA 172419 >seq7 Length=48961560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 11630 CACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAAT 11689 || ||||||||||| || | |||||| |||||| || || ||||| || ||||| || Sbjct 5781756 CAAGCAAAATCACAGTGAAGACCTTCATCTCTAGAGATGAGCTCATTTGAGAATGTCAAA 5781697 Query 11690 CCGGGCATCAATCCTCGtttttttATCCAAAATATAGCA 11728 || ||||||||||||| ||||| | ||| ||||| ||| Sbjct 5781696 CCTGGCATCAATCCTCTCTTTTTAAGCCAGAATATGGCA 5781658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468483060296880