Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4 118 1e-21 seq6 100 3e-16 seq55 95.1 1e-14 >seq4 Length=49191682 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| |||||||||||| ||||| |||||||| | ||| ||| |||||| | |||| Sbjct 19846653 TGAAGCGTAGACTCTTTCTGAATATTATAATCTGCAAGTGTTCTCCCGTCTTCTAACTGT 19846712 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||| || |||||||| || || || ||||||||||| |||||| Sbjct 19846713 TTTCCGGCGAAGATCAACCGCTGCTGATCCGGTGGAATTCCTTCTTTGTCTTGGATTTTG 19846772 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 ||| | | || | |||||||| || || || || | || | || |||||||| Sbjct 19846773 GCTTTCACGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGCGTTATGGTTTTGCCGGTT 19846832 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 19846833 AGGGTTTTGACGAAGATCTGCAT 19846855 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||||| |||||||| || || ||||| ||||| Sbjct 14092860 CCACCACGAAGACGCAACACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCG 14092919 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| ||||| || || || |||||| | |||||||| || || Sbjct 14092920 AGGGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGA 14092979 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || ||| || || | | || | |||||| | ||||||| Sbjct 14092980 ATACCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATTGTGTCAGAACTCTCCACC 14093039 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| ||| | || || || || | || || ||||| ||||||||| Sbjct 14093040 TCAAGGGTAATAGTTTTACCAGTGAGGGTCTTCACGAAGATTTGCATA 14093087 >seq6 Length=59463898 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| |||| || || | ||||| |||| || || |||||||| ||||| ||||| Sbjct 20997290 GCCACCTCTCAACCGAAGCACTAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGC 20997231 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | ||||| | |||||||| || |||| || | ||| ||||| || || Sbjct 20997230 AAGGGTACGGCCATCTTCTAATTGTTTACCGGCGAAGATAAGTCTTTGTTGATCTGGTGG 20997171 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || ||| | | || | || |||| |||||| Sbjct 20997170 GATCCCTTCCTTGTCTTGGATCTTAGCTTTCACGTTGTCTATGGTATCGGAACTCTCCAC 20997111 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | || ||||||||||| ||||| ||||| |||||||| Sbjct 20997110 CTCAAGGGTGATGGTTTTGCCGGTCAATGTTTTCACGAAGATTTGCAT 20997063 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 || ||||| ||||||| || ||||| ||||| |||||||||||| | || || Sbjct 20998189 CGTAAAACCAAGTGAAGTGTGGACTCCTTTTGGATGTTATAATCGGCAAGAGTCCTTCCA 20998130 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 ||||| ||||||||||||||| |||| || | |||||||| || || || || || || Sbjct 20998129 TCTTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATACCCTCCTTA 20998070 Query 139670 TCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 || ||| | || | ||| | | || | || || | ||| ||||| | || | Sbjct 20998069 TC-TTGAATCTTGGCTTTCACATTATCAATAGTATCTGAACTCTCTACCTCCAAAGTAAT 20998011 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || ||||| || || || || |||||||| Sbjct 20998010 AGTCTTTCCTGTCAAAGTCTTAACAAAAATTTGCAT 20997975 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||||||| | || | || ||||| ||||||||||| |||||| | Sbjct 17146341 CCACCACGGAGACGCAAAACAAGATGGAGAGTTGACTCCTTTTGAATGTTGTAATCGGCC 17146282 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| ||||| || |||||| | |||| | |||||| || || || Sbjct 17146281 AAGGTTCGTCCA-TCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGG 17146223 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| |||||||| || ||| || | | || | ||||| | ||| || Sbjct 17146222 AATGCCCTCTTTGTCTTGTATCTTTGCCTTGACATTGTCTATGGTGTCAGAACTCTCTAC 17146163 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | ||||| || || | || || || || ||||||||| Sbjct 17146162 CTCAAGTGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAGATTTGCATA 17146114 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GC 139595 ||| |||| || || | || || |||| ||||||||||| || ||||| ||||| || Sbjct 20997518 GCCACCTCTCAATCGAAGCACCAAATGAAGGGTAGACTCTTTCTGGATGTTGTAATCAGC 20997459 Query 139596 TCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | || || || || || ||||| || ||| |||| || | |||||||| |||| Sbjct 20997458 T-AGGGTTCTACCATCCTCAAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAG 20997400 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | || || |||||||| ||| || || | | || | || || | | || | Sbjct 20997399 GGATACCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATCGTATCAGACGATTCAA 20997340 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| ||| | || || |||||||| || || |||||||| ||||| Sbjct 20997339 CCTCAAGGGTGATGGTTTTTCCGGTCAAGGTCTTAACGAATATCTGCAT 20997291 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| |||||||| ||||| || || | ||||| |||||||| ||| Sbjct 17146083 GTGGACTCTTTCTGAATGTTGTAATCTGCCAAAGTTCGGCCATCTTCAAGCTGTTTGCCA 17146024 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGT-TT 139686 ||| |||| || | || || || || || ||||| |||||||| ||| | || | || Sbjct 17146023 GCAAAGATGAGCCTCTGTTGGTCTGGTGGAATGCCCTCTTTGTCC-TGAATCTTAGCCTT 17145965 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | || || | | ||||||||||| || | ||||| ||||| | || Sbjct 17145964 TACATTGTCGATGGTATCAGAGCTCTCCACCTCAAGAGTGATGGTCTTTCCGGTGAGAGT 17145905 Query 139747 TTTTACGAATATTTGCAT 139764 || || ||||||||||| Sbjct 17145904 CTTCACAAATATTTGCAT 17145887 >seq55 Length=606834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 172/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 52537 GCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAA 52596 ||| |||| | |||| ||| | || || || | |||||||| ||||||||||||| | Sbjct 250020 GCTATTGAGACGATTCCTTGTATTCGTAAGAAAGCGGATTGGGCTTTGAAATGGATCG-A 250078 Query 52597 AACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGttt 52656 || | | | ||||| ||| | | || || |||||| || |||||| | ||| Sbjct 250079 TTCGTC--GGATTCGTTTGCTGAAAGAATCGTTGCTTTTGCTTGCGTTGAAGGTATTTTT 250136 Query 52657 ttttCGGGTAGTTTTGCGGCAATATTTT-ACATCAAAACCTTGGGCATAATGCCCGGCCT 52715 || || |||||||| ||||| |||| | | |||| | | || ||||||| || | Sbjct 250137 TTCTCTGGTAGTTTCTGTGCAATTTTTTGGCTTAAAAAACGT-GGTTTAATGCCTGGTTT 250195 Query 52716 CACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTT 52775 || ||| |||||| | || ||||| ||||||||| | || |||||||| ||||| Sbjct 250196 AACTTTTTCAAACGAGCTTATTTCGCGTGACGAAGGACTTCATTGTGATTTTGCTTGTTT 250255 Query 52776 GTATTAT 52782 | |||| Sbjct 250256 GCTTTAT 250262 Score = 95.1 bits (104), Expect = 1e-14 Identities = 172/247 (70%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 52537 GCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAA 52596 ||| |||| | |||| ||| | || || || | |||||||| ||||||||||||| | Sbjct 258703 GCTATTGAGACGATTCCTTGTATTCGTAAGAAAGCGGATTGGGCTTTGAAATGGATCG-A 258761 Query 52597 AACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGttt 52656 || | | | ||||| ||| | | || || |||||| || |||||| | ||| Sbjct 258762 TTCGTC--GGATTCGTTTGCTGAAAGAATCGTTGCTTTTGCTTGCGTTGAAGGTATTTTT 258819 Query 52657 ttttCGGGTAGTTTTGCGGCAATATTTT-ACATCAAAACCTTGGGCATAATGCCCGGCCT 52715 || || |||||||| ||||| |||| | | |||| | | || ||||||| || | Sbjct 258820 TTCTCTGGTAGTTTCTGTGCAATTTTTTGGCTTAAAAAACGT-GGTTTAATGCCTGGTTT 258878 Query 52716 CACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTT 52775 || ||| |||||| | || ||||| ||||||||| | || |||||||| ||||| Sbjct 258879 AACTTTTTCAAACGAGCTTATTTCGCGTGACGAAGGACTTCATTGTGATTTTGCTTGTTT 258938 Query 52776 GTATTAT 52782 | |||| Sbjct 258939 GCTTTAT 258945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496019806898400