Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq55 156 4e-33 seq104 102 8e-17 seq7 93.3 4e-14 >seq55 Length=606834 Score = 156 bits (172), Expect = 4e-33 Identities = 425/642 (66%), Gaps = 19/642 (3%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| |||||||| | ||| | || |||||||||||||| || |||| || || || Sbjct 250544 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTCTTCCCTTGAAGAGAAATCAA 250485 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| || ||||| | |||| | | ||||| ||||||| || || | Sbjct 250484 CTCCATCCAATCAAAAGGATTC-TGAACATTATAAACTTTCCCACAACCAAGCTCACCCA 250426 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | || ||||| |||| ||||||||||| || ||| ||||||| |||||| || | | Sbjct 250425 ACAACCTATCGGCAACGAACTCAATATACTGGCTCATCAAATCACCATTCATCCCGACCA 250366 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 |||| | | | ||| || | || || || || || | | || Sbjct 250365 ACGCGCACGGAAGCGCGTCACAAACAAACTCCCTCTCAATCTCAACCGCATCACTCACAA 250306 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTT-TAGATGTTTAA-AAATTAAACACGC 13664 | |||| | || | | || |||| | || | || ||| ||||| || Sbjct 250305 TCTTCTTCACTCGCTCCTCACTC--AGTTTATTCCTCAATAGTGAATAAAGCAAACAAGC 250248 Query 13665 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13724 ||||||||||||||| || || || | |||||| ||||||||||| ||||| || || Sbjct 250247 AAAATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGTTAAACCAGG 250188 Query 13725 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 13784 ||| || || |||||||| | |||||| |||||| ||| || || || || || || Sbjct 250187 CATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTACCAGAGAAAAAAATACC 250128 Query 13785 CTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATC 13842 ||||| |||||| || | | || ||| ||||||| | | || ||| Sbjct 250127 TTCAACGCAAGCAAAAGCAACGATTCTTTCAGCAAACGA-----ATCCGACGAATCGATC 250073 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 ||||| |||||| || | ||| || |||| || || || || || |||| || Sbjct 250072 CATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGCATGAAAC 250013 Query 13903 AAATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 ||| | | |||||| | | ||| || || || |||| ||| | ||||||||| Sbjct 250012 AAACGATTCTTCTCAACCGAATCGCTT---ATATACGTTTCAAGAAGGAGACTATACATT 249956 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 ||||| ||||| || || || || || |||||||| |||||| Sbjct 249955 TCAGAATGTATATTCTCAATCGCGATTTGAAAACCGTAAAAA 249914 Score = 156 bits (172), Expect = 4e-33 Identities = 425/642 (66%), Gaps = 19/642 (3%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||| |||||||| | ||| | || |||||||||||||| || |||| || || || Sbjct 259227 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTCTTCCCTTGAAGAGAAATCAA 259168 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAA-ACACTTTATCACAACCTAGTTCTAATA 13486 ||||| |||| || ||||| | |||| | | ||||| ||||||| || || | Sbjct 259167 CTCCATCCAATCAAAAGGATTC-TGAACATTATAAACTTTCCCACAACCAAGCTCACCCA 259109 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 | || ||||| |||| ||||||||||| || ||| ||||||| |||||| || | | Sbjct 259108 ACAACCTATCGGCAACGAACTCAATATACTGGCTCATCAAATCACCATTCATCCCGACCA 259049 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 |||| | | | ||| || | || || || || || | | || Sbjct 259048 ACGCGCACGGAAGCGCGTCACAAACAAACTCCCTCTCAATCTCAACCGCATCACTCACAA 258989 Query 13607 TAATCTTAATAATGTCATTAGAAGGAGGATATTT-TAGATGTTTAA-AAATTAAACACGC 13664 | |||| | || | | || |||| | || | || ||| ||||| || Sbjct 258988 TCTTCTTCACTCGCTCCTCACTC--AGTTTATTCCTCAATAGTGAATAAAGCAAACAAGC 258931 Query 13665 AAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGG 13724 ||||||||||||||| || || || | |||||| ||||||||||| ||||| || || Sbjct 258930 AAAATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGTTAAACCAGG 258871 Query 13725 CATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCC 13784 ||| || || |||||||| | |||||| |||||| ||| || || || || || || Sbjct 258870 CATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTACCAGAGAAAAAAATACC 258811 Query 13785 CTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATC 13842 ||||| |||||| || | | || ||| ||||||| | | || ||| Sbjct 258810 TTCAACGCAAGCAAAAGCAACGATTCTTTCAGCAAACGA-----ATCCGACGAATCGATC 258756 Query 13843 CATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAAT 13902 ||||| |||||| || | ||| || |||| || || || || || |||| || Sbjct 258755 CATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGCATGAAAC 258696 Query 13903 AAATGTTCCTTCTCTTTAGTA---CTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 ||| | | |||||| | | ||| || || || |||| ||| | ||||||||| Sbjct 258695 AAACGATTCTTCTCAACCGAATCGCTT---ATATACGTTTCAAGAAGGAGACTATACATT 258639 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAA 14001 ||||| ||||| || || || || || |||||||| |||||| Sbjct 258638 TCAGAATGTATATTCTCAATCGCGATTTGAAAACCGTAAAAA 258597 >seq104 Length=244920 Score = 102 bits (112), Expect = 8e-17 Identities = 242/364 (66%), Gaps = 14/364 (4%) Strand=Plus/Plus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 ||||| || |||||||||||||| || || || | |||||| ||||||||||| ||| Sbjct 172064 AAACAAGCGAAATCACAATGAAGTCCTTCGTCACACAAAATAAGCTCGTTTGAAAAAGTT 172123 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 13776 || || |||| || || |||||||| | ||||||||| ||| || | || || Sbjct 172124 AAACCATGCATTAAACCACGTTTTTTAAGCCAAAATATCGCACATAAACTACTAGAGAAA 172183 Query 13777 AATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTT 13836 || || || ||||| |||||| || | | || ||| ||| | | | | Sbjct 172184 AAAATACCTTCAACGCAAGCAAAAGCAACGATTCTTTCAACAATCAA------ATCGACG 172237 Query 13837 GAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTG 13894 || |||||||| |||||| || | ||| || |||| || || || || || | Sbjct 172238 AATCGATCCATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAG 172297 Query 13895 CATTGAATAAATGTTCCTTCT---CTTTAGTACTTGAAATGTATGTATCAATAAGTAAGC 13951 ||| || ||| | ||||| | | ||| || ||||| |||| ||| | | Sbjct 172298 CATGAAACAAACAATTCTTCTCAACCAAATCGCTT---ATATATGTTTCAAGAAGGAGAC 172354 Query 13952 TATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTT 14011 ||||||||||||| ||||| || || || || || || || | || ||| | |||| Sbjct 172355 TATACATTTCAGAATGTATATTCTCAATCGCGATTTGGAACCTGTAGAAAGCACGCGCTT 172414 Query 14012 CTGA 14015 |||| Sbjct 172415 CTGA 172418 Score = 89.7 bits (98), Expect = 5e-13 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 13390 TTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATT- 13448 || |||||||| |||||||| | || || || || ||||| |||| || ||||| Sbjct 171772 TTCTCAAAAAATTTAGTTTTCCTTTGAAGAGAAATCAACTCCATCCAATCAAAAGGATTC 171831 Query 13449 TGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTC 13508 || || || | ||||| ||||||| || || || || |||||||||| |||||| Sbjct 171832 TGAAGAT-TATAAACTTTCCCACAACCAAGCTCACCCAACAACCTATCAGCAACAAACTC 171890 Query 13509 AATATATTGAGACATTAAATCACAATTCATACC 13541 ||||||||| ||| ||||||| |||||| || Sbjct 171891 AATATATTGGCTCATCAAATCACCATTCATCCC 171923 >seq7 Length=48961560 Score = 93.3 bits (102), Expect = 4e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||||||||| ||||| || ||||||||| || || || ||||| ||||| || Sbjct 5781756 CAAGCAAAATCACAGTGAAGACCTTCATCTCTAGAGATGAGCTCATTTGAGAATGTCAAA 5781697 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 |||||||||||||||| ||||| | ||| ||||| ||| Sbjct 5781696 CCTGGCATCAATCCTCTCTTTTTAAGCCAGAATATGGCA 5781658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478546163720280