Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq55 251 1e-61 seq104 125 1e-23 seq5 98.7 1e-15 seq6 89.7 7e-13 >seq55 Length=606834 Score = 251 bits (278), Expect = 1e-61 Identities = 601/899 (67%), Gaps = 10/899 (1%) Strand=Plus/Minus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || ||||| || || || || || ||||| |||||||| |||| | || || Sbjct 250544 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTCTTCCCTTGAAGAGAAATCAA 250485 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| ||||||| ||||| ||||||||||| ||| | | || | ||| | Sbjct 250484 CTCCATCCAATCAAAAGGATTCTGAACATTATAAACTTTCCCACAACCAAGCTCACCCAA 250425 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 41951 ||| ||||| || | ||| || ||||| |||||| |||| |||||| || | || Sbjct 250424 CAACCTATCGGCAACGAACTCAATATACTGGCTCATCAAATCACCATTCATCCCGACCAA 250365 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 || ||||| || || || ||| || ||||| ||||| || | | || Sbjct 250364 CGCGCAC-GGAAGCGCGTCACAAACAAACTCCCTCTCAATCTCAACCGCATCACTCACAA 250306 Query 42012 TAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 42070 | |||| ||| || |||||| || || | || || | | | |||||| || Sbjct 250305 TCT-TCTTCACTCGCTCCTCACTCAGTTTATTCCTCAATAGTGAATAAAGCAAACAAGCA 250247 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 ||||| || || || || || || | ||| | ||||| ||||| || | || ||| Sbjct 250246 AAATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 250187 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAG-ACGCAAATGATCCAGAAAAGAAGATTCC 42189 |||| ||||| |||||||||||||| || | || ||| | ||||| || || || || Sbjct 250186 ATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTA-CCAGAGAAAAAAATACC 250128 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC--ATGTATCCAC 42247 ||| || ||||| |||| | ||| || || | || | | | || ||||| Sbjct 250127 TTCAACGCAAGCAAAAGCAACGATTCTTTCAGCAAA--CGAATCCGACGAATCGATCCAT 250070 Query 42248 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 || ||||||||| || ||||| | |||||| ||||| || || |||| ||| | | Sbjct 250069 TTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGCATGAAACAAA 250010 Query 42308 TAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAA 42367 || || ||| ||| | | ||| || || | | |||||||||||||| ||| Sbjct 250009 CGATTCTTCTCAACCGAATCGCTTATATACGTTTCAAGAAGGAGACTATACATTTCAGAA 249950 Query 42368 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACT 42427 || || || ||||| || || ||||| ||||| ||| | ||||| | ||| || ||| Sbjct 249949 TGTATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCGCCTCTGAAACTTGAACT 249890 Query 42428 TCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAAC 42487 ||| | |||| | |||| | ||| || || || ||||| || || ||||| Sbjct 249889 TCTTTCATGAATCTTCCAGCAAGATTCTCTAAAACGATGCCGTCGGATGCGGCGAAAAAT 249830 Query 42488 GCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATA 42547 || | || || || ||| | | |||| | ||||| || ||||||| | | | Sbjct 249829 GCAAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAATTGTTCCAATGTTGAAGA 249770 Query 42548 TCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATA 42607 |||| |||| ||| |||||||| | ||||| ||||| ||||| || ||||| ||||| Sbjct 249769 TCTTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACATT 249710 Query 42608 TTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 42666 | ||| || | | | |||| ||||||||| ||| ||| | | ||| ||||| ||||| Sbjct 249709 TCCCAAATTTTAGGGTATTCAATTGGGAACATACAAAAACGGTCTGGGTTTGGAGCAAG 249651 Score = 251 bits (278), Expect = 1e-61 Identities = 601/899 (67%), Gaps = 10/899 (1%) Strand=Plus/Minus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||| || ||||| || || || || || ||||| |||||||| |||| | || || Sbjct 259227 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTCTTCCCTTGAAGAGAAATCAA 259168 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAAT 41892 ||||| ||||||| ||||| ||||||||||| ||| | | || | ||| | Sbjct 259167 CTCCATCCAATCAAAAGGATTCTGAACATTATAAACTTTCCCACAACCAAGCTCACCCAA 259108 Query 41893 CAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTAT-AA 41951 ||| ||||| || | ||| || ||||| |||||| |||| |||||| || | || Sbjct 259107 CAACCTATCGGCAACGAACTCAATATACTGGCTCATCAAATCACCATTCATCCCGACCAA 259048 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 || ||||| || || || ||| || ||||| ||||| || | | || Sbjct 259047 CGCGCAC-GGAAGCGCGTCACAAACAAACTCCCTCTCAATCTCAACCGCATCACTCACAA 258989 Query 42012 TAGATCTT-ACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCG 42070 | |||| ||| || |||||| || || | || || | | | |||||| || Sbjct 258988 TCT-TCTTCACTCGCTCCTCACTCAGTTTATTCCTCAATAGTGAATAAAGCAAACAAGCA 258930 Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 ||||| || || || || || || | ||| | ||||| ||||| || | || ||| Sbjct 258929 AAATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGC 258870 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAG-ACGCAAATGATCCAGAAAAGAAGATTCC 42189 |||| ||||| |||||||||||||| || | || ||| | ||||| || || || || Sbjct 258869 ATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTA-CCAGAGAAAAAAATACC 258811 Query 42190 TTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTC--ATGTATCCAC 42247 ||| || ||||| |||| | ||| || || | || | | | || ||||| Sbjct 258810 TTCAACGCAAGCAAAAGCAACGATTCTTTCAGCAAA--CGAATCCGACGAATCGATCCAT 258753 Query 42248 TTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 || ||||||||| || ||||| | |||||| ||||| || || |||| ||| | | Sbjct 258752 TTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGCATGAAACAAA 258693 Query 42308 TAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAA 42367 || || ||| ||| | | ||| || || | | |||||||||||||| ||| Sbjct 258692 CGATTCTTCTCAACCGAATCGCTTATATACGTTTCAAGAAGGAGACTATACATTTCAGAA 258633 Query 42368 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACT 42427 || || || ||||| || || ||||| ||||| ||| | ||||| | ||| || ||| Sbjct 258632 TGTATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCGCCTCTGAAACTTGAACT 258573 Query 42428 TCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAAC 42487 ||| | |||| | |||| | ||| || || || ||||| || || ||||| Sbjct 258572 TCTTTCATGAATCTTCCAGCAAGATTCTCTAAAACGATGCCGTCGGATGCGGCGAAAAAT 258513 Query 42488 GCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATA 42547 || | || || || ||| | | |||| | ||||| || ||||||| | | | Sbjct 258512 GCAAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAATTGTTCCAATGTTGAAGA 258453 Query 42548 TCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATA 42607 |||| |||| ||| |||||||| | ||||| ||||| ||||| || ||||| ||||| Sbjct 258452 TCTTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACATT 258393 Query 42608 TTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGTGCAAG 42666 | ||| || | | | |||| ||||||||| ||| ||| | | ||| ||||| ||||| Sbjct 258392 TCCCAAATTTTAGGGTATTCAATTGGGAACATACAAAAACGGTCTGGGTTTGGAGCAAG 258334 >seq104 Length=244920 Score = 125 bits (138), Expect = 1e-23 Identities = 256/374 (68%), Gaps = 11/374 (3%) Strand=Plus/Plus Query 42062 AAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT-TCGTTGGAAAACGT 42120 ||||| |||||||| || || || || || || | || || ||| ||||| ||||| || Sbjct 172064 AAACAAGCGAAATCACAATGAAGTCCTTCGTCAC-ACAAAATAAGCTCGTTTGAAAAAGT 172122 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAG-ACGCAAATGATCCAGAAA 42179 | || |||||| ||||| ||||||||||||||||| | || ||| | | ||| | Sbjct 172123 TAAACCATGCATTAAACCACGTTTTTTAAGCCAAAATATCGCACATAAACTA-CTAGAGA 172181 Query 42180 AGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT---AACCGGCACTGT 42236 | || || ||||| || ||||| |||| | ||| || || || || | Sbjct 172182 AAAAAATACCTTCAACGCAAGCAAAAGCAACGATTCTTTCAACAATCAAATCGACGA--- 172238 Query 42237 CATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 || ||||| || ||||||||| || ||||| | |||||| ||||| || || | Sbjct 172239 -ATCGATCCATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAG 172297 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 ||| ||| | | | || || ||| ||| | | |||||| || | | ||||||| Sbjct 172298 CATGAAACAAACAATTCTTCTCAACCAAATCGCTTATATATGTTTCAAGAAGGAGACTAT 172357 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 ||||||| ||||| || || ||||| || || || || | ||||||| | || || | Sbjct 172358 ACATTTCAGAATGTATATTCTCAATCGCGATTTGGAACCTGTAGAAAGCACGCGCTTCTG 172417 Query 42417 TAACCTGTACTTCT 42430 ||| || |||||| Sbjct 172418 AAACTTGAACTTCT 172431 >seq5 Length=48169137 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | || || |||||||| || |||||| ||| ||||| || | Sbjct 35185462 GTCCCAGCATTGAAAAGAGTTGGCGAAGCGTGAGTGAACCATCTTTGAGACATTAAGTGA 35185403 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || | || ||| ||||||||||| | ||| ||||| || | || | ||| ||| Sbjct 35185402 TAAGTTTTAACAGCAGATTCTATATCATCCTTATGAATTCCAACAGAAACCCTCATCAAC 35185343 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAGGATTTTTCCAA 72596 ||||||||||| ||||| || | ||| | || | |||||||| || ||| | || | Sbjct 35185342 ATATGCTGAGGCCTTTCCAC-AACTTTTCCTTGAACTTTCAACAGATAAGATCTCTCTAG 35185284 Query 72597 AGTTTTAAAACCAAAATA 72614 ||||| || ||||| || Sbjct 35185283 GGTTTTGAATCCAAAGTA 35185266 Score = 95.1 bits (104), Expect = 2e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| |||||||| | || | || |||| |||| | || | || |||||||| |||||| Sbjct 35185794 TCCACCCTGATCAACATAGCGGGCAGTGTCATTAAACACACGCAGCATTGGAACAATACC 35185735 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| || | ||||| || || || || || ||| |||||| || || ||| || Sbjct 35185734 ATTAGACGTCCCATTTGTTCCACGAATGTAACTACCATGGGCACGTATGTTATGAATAGA 35185675 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| ||||| |||| || | || || || || |||||||| || Sbjct 35185674 AACACCAATTCCTCCTGCAGATTTACTAATAATAGCACACTCCTTCAATGTATCATAAAT 35185615 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||||| ||||||||||| ||||| Sbjct 35185614 CCCCTCAATACTATCATCTTTCATG 35185590 >seq6 Length=59463898 Score = 89.7 bits (98), Expect = 7e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | || |||||||| || || ||||| | | ||||| || | Sbjct 7426602 GTCCCAGCATTGAAAAGAGTTGGAGAAGCATGAGTGAACCACCTCTGAGACATTAAGTGA 7426543 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || || | || ||| ||||||||||| | ||| ||||| || | || | ||| ||| Sbjct 7426542 TAAGTTTTAACAGCAGATTCTATATCATCCTTATGAATTCCAACAGAAACCCTCATCAAC 7426483 Query 72538 ATATGCTGAGGTCTTTCAACGATCTTGTTATT-TATTTTCAACAAGTAGGATTTTTCCAA 72596 ||||||||||| ||||| || | ||| | || | |||||||| || ||| | || | Sbjct 7426482 ATATGCTGAGGCCTTTCTAC-AACTTTTCCTTCAACTTTCAACAGATAAGATCTCTCGAG 7426424 Query 72597 AGTTTTAAAACCAAAATA 72614 ||||| || ||||| || Sbjct 7426423 GGTTTTGAATCCAAAGTA 7426406 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| |||||||| | || | || |||| |||| | || | | |||||||| |||||| Sbjct 7426929 TCCACCCTGATCAACATAGCGGGCAGTGTCATTAAACACACGGAGCATTGGAACAATACC 7426870 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || || || || ||| ||||| || || || || Sbjct 7426869 ATTAGATGTCCCATTTGTTCCTCGAATGTAACTACCATGTGCACGTATGTTATGAACAGA 7426810 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| ||||| |||| || | || || || || |||||||| || Sbjct 7426809 AACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTTCAAAGTATCATAAAT 7426750 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||||| ||||||||||| ||||| Sbjct 7426749 CCCCTCAATACTATCATCTTTCATG 7426725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671079409886520