Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4 100 3e-16 seq6 95.1 1e-14 >seq4 Length=49191682 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142975 AACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTC 143034 ||| | ||||| ||||| ||||| || || || ||||| | ||| ||| |||||| Sbjct 19846646 AACAAGATGAAGCGTAGACTCTTTCTGAATATTATAATCTGCAAGTGTTCTCCCGTCTTC 19846705 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 | ||||| || || |||||| || |||||||| || || || ||||||||||| Sbjct 19846706 TAACTGTTTTCCGGCGAAGATCAACCGCTGCTGATCCGGTGGAATTCCTTCTTTGTCTTG 19846765 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||||| ||| | | || | ||||| | || ||||||||| | || | || || Sbjct 19846766 GATTTTGGCTTTCACGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGCGTTATGGTTTT 19846825 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| | ||||| ||||| || ||||| Sbjct 19846826 GCCGGTTAGGGTTTTGACGAAGATCTGCAT 19846855 >seq6 Length=59463898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GC 143015 ||| |||| || || | || ||||||| ||||| ||||| || ||||||||||| || Sbjct 20997518 GCCACCTCTCAATCGAAGCACCAAATGAAGGGTAGACTCTTTCTGGATGTTGTAATCAGC 20997459 Query 143016 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | || || || || |||||||| || ||| |||| || | |||||||| |||| Sbjct 20997458 T-AGGGTTCTACCATCCTCAAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAG 20997400 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || || |||||||| || || || | | || | ||| || | | ||| | Sbjct 20997399 GGATACCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATCGTATCAGACGATTCAA 20997340 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||| || | || || |||||||| || || |||||||| ||||| Sbjct 20997339 CCTCAAGGGTGATGGTTTTTCCGGTCAAGGTCTTAACGAATATCTGCAT 20997291 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||||||| | ||| | || || || ||||| |||||||||||| | Sbjct 17146341 CCACCACGGAGACGCAAAACAAGATGGAGAGTTGACTCCTTTTGAATGTTGTAATCGGCC 17146282 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| || || || |||||| | |||| | |||||| || || || Sbjct 17146281 AAGGTTCGTCCA-TCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGG 17146223 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| |||||||| || ||| || | | || | ||||| | ||||| Sbjct 17146222 AATGCCCTCTTTGTCTTGTATCTTTGCCTTGACATTGTCTATGGTGTCAGAACTCTCTAC 17146163 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 |||| || | ||||| || || | || || || || ||||||||| Sbjct 17146162 CTCAAGTGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAGATTTGCATA 17146114 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 || ||||| || |||| ||| || || ||||| ||||| |||||| | || || Sbjct 20998189 CGTAAAACCAAGTGAAGTGTGGACTCCTTTTGGATGTTATAATCGGCAAGAGTCCTTCCA 20998130 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || |||||||||||| |||| || | |||||||| || || || || || || Sbjct 20998129 TCTTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATACCCTCCTTA 20998070 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | || | || || | ||||| || | ||| | Sbjct 20998069 TCTTGAATCTTGGCTTTCACATTATCAATAGTATCTGAACTCTCTACCTCCAAAGTAATA 20998010 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || ||||| || || || || |||||||| Sbjct 20998009 GTCTTTCCTGTCAAAGTCTTAACAAAAATTTGCAT 20997975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506969231354640