Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 3e-15 seq5 86.0 5e-12 >seq6 Length=59463898 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | || ||| |||| ||| | || ||||||||||| || || ||||| || Sbjct 20998201 CCCCCACGAAGCCGTAAAACCAAGTGAAGTGTGGACTCCTTTTGGATGTTATAATCGGCA 20998142 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || || ||||||||||| ||| | ||||| ||||||||||| || Sbjct 20998141 AGAGTCCTTCCATCTTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGG 20998082 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| || || ||| || ||| || | | | |||||| | ||| Sbjct 20998081 ATACCCTCCTTATCTTGAATCTTGGCTTTCACATTATCAATAGTATCTGAACTCTCTACC 20998022 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCATT 19042 || | ||||| || || ||||| ||||| || ||||||||||||||| Sbjct 20998021 TCCAAAGTAATAGTCTTTCCTGTCAAAGTCTTAACAAAAATTTGCATT 20997974 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| |||||| ||||| ||||| || ||||| ||||| ||| Sbjct 20998429 CCACCACGAAGCCTCAAAACCAAGTGCAAAGTAGATTCCTTCTGGATATTATAATCAGCC 20998370 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | ||||||| ||| || || ||| |||| || ||||||||||| || Sbjct 20998369 AGAGTACGTCCATCCTCCAACTGCTTGCCGGCAAAAATTAGCCTCTGCTGATCTGGAGGA 20998310 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||||||||| ||||||| || || | | | ||||| | || Sbjct 20998309 ATACCCTCTTTGTCCTGAATTTTCGCCTTCACATTATCTATTGTATCAGAACTTTCAACC 20998250 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | || || || || || || | || ||||||||||||||||| Sbjct 20998249 TCCAAAGTTATTGTCTTTCCGGTAAGGGTCTTGACAAAAATTTGCAT 20998203 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || |||||||| ||||||||||| || | || | || |||| || ||||| Sbjct 20997715 GTGGATTCCTTTTGGATATTGTAATCAGCTAGGGTGCGACCATCTTCCAATTGCTTACCG 20997656 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 || | ||||| ||||||||||| || | ||||||||||| || || ||| Sbjct 20997655 GCGAAGATAAGCCTCTGCTGATCAGGAGGGATACCCTCTTTGTCCTGGATCTTGGCTTTG 20997596 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | ||||| || || |||| ||||||||| || ||||| ||||| Sbjct 20997595 ACATTATCAATCGTATCAGAAGATTCAACCTCGAGGGTAATGGTCTTCCCTGTCAAAGTC 20997536 Query 19025 TTGACAAAAATTTGCAT 19041 || |||||||||||||| Sbjct 20997535 TTAACAAAAATTTGCAT 20997519 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | || ||||| || ||||| |||||||| |||| ||| | | || || Sbjct 17146096 CACCAAATGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGCCAAAGTTCGGCCATCTTC 17146037 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||||| || ||| | || || ||||| || || || | |||||||||||| Sbjct 17146036 AAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGAATGCCCTCTTTGTCCTG 17145977 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||||| | | ||| ||||| |||| || | || ||||| || Sbjct 17145976 AATCTTAGCCTTTACATTGTCGATGGTATCAGAGCTCTCCACCTCAAGAGTGATGGTCTT 17145917 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | ||| || ||||| |||||||| Sbjct 17145916 TCCGGTGAGAGTCTTCACAAATATTTGCAT 17145887 >seq5 Length=48169137 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| || | ||| || |||||||| |||||||||||||||| ||| | |||| || Sbjct 36920719 CACCAAATGAAGCGTTGATTCCTTTTGGATATTGTAATCCGCCAGTGTCCTTCCGTCTTC 36920660 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 | ||||| || || | || | || ||||| || || | ||||| ||||| Sbjct 36920659 TAATTGTTTTCCGGCGAAGATCAATCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTG 36920600 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 |||||| || || | | ||| |||||| | ||| || | |||||||||||| Sbjct 36920599 AATTTTTGCCTTCACGTTGTCGATTGTATCGGAACTCTCTACCTCTAGGGTAATGGTTTT 36920540 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || |||| ||||| || || || ||||| Sbjct 36920539 GCCGGTTAGGGTTTTCACGAAGATCTGCAT 36920510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414536790077038