Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq4 109 4e-19 seq5 93.3 3e-14 seq6 86.0 4e-12 >seq4 Length=49191682 Score = 109 bits (120), Expect = 4e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC-ATCGTCCAATTG 43977 || || ||| ||| || |||||||| ||||| || | | || ||| ||||| || Sbjct 14092656 TGAAGGGTGGACTCCTTCTGAATATTGTAATCAGC-AAGGGTCCTTCCATCCTCCAACTG 14092714 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 || |||||||| ||||||| ||||||||| | || | |||||||||||| |||||| Sbjct 14092715 CTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCTTTATCCTGAATTTT 14092774 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 | || || || ||| ||||| | |||||| || | |||||||| || || || Sbjct 14092775 TGCCTTCACATTATCAATGGTATCAGAGCTCTCCACCTCAAGGGTAATTGTCTTCCCAGT 14092834 Query 44098 TAAAGTCTTCACAAATATTTGCAT 44121 || ||||||||||| || ||||| Sbjct 14092835 CAAGGTCTTCACAAAAATCTGCAT 14092858 Score = 86.0 bits (94), Expect = 4e-12 Identities = 151/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 43909 TAACACCAA-ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTG-ACGCTCA 43966 ||| | ||| ||| ||||| |||||| |||||||||||||| | || || | | | Sbjct 19846642 TAAGAACAAGATGAAGCGTAGACTCTTTCTGAATATTATAATC-TGCAAGTGTTCTCCCG 19846700 Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || || || |||||||| || || |||||||| ||||| ||| | || | |||||||| Sbjct 19846701 TCTTCTAACTGTTTTCCGGCGAAGATCAACCGCTGCTGATCCGGTGGAATTCCTTCTTTG 19846760 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| ||||| ||| || | | | || || | | || || || | ||| || Sbjct 19846761 TCTTGGATTTTGGCTTTCACGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGCGTTATG 19846820 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||| ||||||| || || || || || |||||| Sbjct 19846821 GTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCATG 19846856 >seq5 Length=48169137 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| ||||| || ||||| ||||| ||||| | | | | || || Sbjct 36920719 CACCAAATGAAGCGTTGATTCCTTTTGGATATTGTAATCCGCCAGTGTCCTTCCGTCTTC 36920660 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 ||||||||||| || || ||||| ||||||||||| |||| | ||| || || ||| Sbjct 36920659 TAATTGTTTTCCGGCGAAGATCAATCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTG 36920600 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||||||| || || | | | ||||| | ||| || || | ||||| ||||| Sbjct 36920599 AATTTTTGCCTTCACGTTGTCGATTGTATCGGAACTCTCTACCTCTAGGGTAATGGTTTT 36920540 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 ||||||| || ||||| || || |||||| Sbjct 36920539 GCCGGTTAGGGTTTTCACGAAGATCTGCATG 36920509 >seq6 Length=59463898 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 ||||||||| || || ||||||||| || || ||||| | |||| |||| || Sbjct 17161426 CACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTC 17161367 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 || || || |||||||| || | || |||||||| | || | ||||| || ||| Sbjct 17161366 CAGCTGCTTGCCTGCAAAAATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTG 17161307 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || || || | | | ||||||| ||| || |||| || || ||||| Sbjct 17161306 AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTTTT 17161247 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||||||||||||||||| Sbjct 17161246 GCCAGTGAGGGTCTTCACAAATATTTGCAT 17161217 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 ||||| |||||||| ||||| || ||| |||| ||||| || || || ||||| Sbjct 20998621 TCTTTCTGAATATTGTAATCTGCCAAAGTACGACCATCCTCCAACTGCTTGCCAGCAAAA 20998562 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | || |||||| || | || | ||| || ||||| ||| ||| ||| || || Sbjct 20998561 ATAAGCCTTTGCTGATCTGGGGGAATACCCTCCTTATCCTGAATCTTTGCTTTCACATTA 20998502 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| || || | ||||| || | ||||| || || || || | ||||||||| Sbjct 20998501 TCAATTGTGTCAGAGCTTTCCACTTCTAAGGTAATAGTCTTCCCAGTAAGTGTCTTCACA 20998442 Query 44111 AATATTTGCATG 44122 |||||||||||| Sbjct 20998441 AATATTTGCATG 20998430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354746783906796