Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 seq3 86.0 5e-12 seq5 82.4 6e-11 seq4 82.4 6e-11 >seq6 Length=59463898 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| |||||||| || ||| ||||| |||||||||||||| || || ||| | |||| Sbjct 17161426 CACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGC-AAGGGTACGCCCATCCT 17161368 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| || | |||| | ||||||||| || || | | ||||||||| Sbjct 17161367 CCAGCTGCTTGCCTGCAAAAATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTTGTCTT 17161308 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | |||||||||| | | ||| |||| || ||||||| Sbjct 17161307 GAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTTT 17161248 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || ||||| || |||||||| || |||||| Sbjct 17161247 TGCCAGTGAGGGTCTTCACAAATATTTGCATC 17161216 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| |||||||||||| ||||||||| ||||||||||| ||||| ||| | || || Sbjct 17145868 CACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAATCTGCCAAAGTTCGGCCATCTTC 17145809 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||| || || | | || | | ||| || || || | | ||||||||| Sbjct 17145808 AAGCTGTTTGCCCGCAAAGATGAGCCTCTGTTGGTCTGGTGGGATGCCTTCCTTGTCTTG 17145749 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 ||| || ||| | | |||||||||| | | ||| ||||| |||||||| || Sbjct 17145748 AATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACCTCGAGAGTTATGGTCTT 17145689 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||||| || || || ||||| |||||| Sbjct 17145688 GCCAGTGAGGGTCTTAACGAAAATTTGCATC 17145658 Score = 82.4 bits (90), Expect = 6e-11 Identities = 163/235 (69%), Gaps = 5/235 (2%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || || | ||||| | |||||||||||| ||| || ||||| |||||||||||||| Sbjct 20997289 CCACCTCTCAACCGAAGCACTAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGC- 20997231 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | || || | || |||||| || | || | | || ||||| || Sbjct 20997230 AAGGGTACGGCCATCTTCTAATTGTTTACCGGCGAAGATAAGTCTTTGTTGATCTGGTGG 20997171 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACG-CTATGGTATCGGTAGACTCCG 48677 | | ||||||||| || || |||| | | |||||||||||| | |||| Sbjct 20997170 GATCCCTTCCTTGTCTTGGATCTTA-GCTTTCACGTTGTCTATGGTATCGGAACTCTCCA 20997112 Query 48678 TCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTC 48732 ||| | || |||||||| ||||| | |||||||| || || |||||| |||| Sbjct 20997111 CCTCAAGGGTGATGGTTTTGCCGGTCAATGTTTTCACGAAGATTTGCATC-TGTC 20997058 >seq3 Length=39989001 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | ||| | || | ||||||||| |||||| || ||||||||||| || Sbjct 35350847 ACCACCACGAAGCCTGAGAACAAGATGAAGTGTTGACTCCTTCTGGATGTTGTAATCGGC 35350906 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCC 48613 ||| || | || || |||||||||||| || |||| ||||||||||||||| Sbjct 35350907 CAAGGTGCGTCCATCTTCAAGCTGCTTACCGGCGAAAATCAAACGCTGCTGATCC 35350961 >seq5 Length=48169137 Score = 82.4 bits (90), Expect = 6e-11 Identities = 160/234 (68%), Gaps = 8/234 (3%) Strand=Plus/Minus Query 48498 AACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAG 48557 |||| || || | ||| | || | |||||||| ||||| |||||||| ||||||| Sbjct 36920966 AACCACCACGGAGCCTGAGAACAAGGTGAAGTGTAGATTCCTTCTGAATGTTATAATCAG 36920907 Query 48558 CCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCG 48617 | | || | ||||| ||||||||||| | | || |||||||| |||||| | Sbjct 36920906 CAAGAGTTCTTCCATCCTCAAGCTGCTTACCAGCAAATATCAAACGCTGTTGATCCGGTG 36920847 Query 48618 GCACACTTTCCTTGTCCATAATTTTCTGCTT----GATAGACGCTATGGTATCGGTAGAC 48673 | | | || || ||| ||| ||| |||| | || | || ||||| | | | Sbjct 36920846 GAATTCCCTCTTTATCCTGAATCTTC-GCTTTCACGTTA---TCAATAGTATCAGAACTC 36920791 Query 48674 TCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || ||| | || |||||||| ||||| || ||||| || |||||||||||| Sbjct 36920790 TCAACCTCCAAGGTGATGGTTTTTCCGGTTAGGGTTTTGACGAAAATCTGCATC 36920737 >seq4 Length=49191682 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCG-TCCTCCAGCTG 48582 ||||| ||| |||||| ||||| ||||||||||| || ||| || ||||||| ||| Sbjct 14092656 TGAAGGGTGGACTCCTTCTGAATATTGTAATCAGC-AAGGGTCCTTCCATCCTCCAACTG 14092714 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || | |||||| ||| || | || ||| || ||| |||||| Sbjct 14092715 CTTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCTTTATCCTGAATTTT 14092774 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | |||||||| | |||| ||| | || || || || || || Sbjct 14092775 TGCCTTCACATTATCAATGGTATCAGAGCTCTCCACCTCAAGGGTAATTGTCTTCCCAGT 14092834 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || ||||||||||||||||| Sbjct 14092835 CAAGGTCTTCACAAAAATCTGCAT 14092858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421214609989127