Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq3 120 2e-22 seq5 116 2e-21 seq1 116 2e-21 seq8 114 7e-21 seq4 114 7e-21 seq6 111 8e-20 seq514 105 3e-18 seq7 105 3e-18 >seq3 Length=39989001 Score = 120 bits (132), Expect = 2e-22 Identities = 87/99 (88%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 11433 ATAGAATTAATAAAA-AATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 |||||| ||| |||| ||| ||||| |||||||| | | |||||||| ||||||||||| Sbjct 34328031 ATAGAAATAAAAAAACAATAAAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCG 34327972 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| |||||||||||||||||||| Sbjct 34327971 TTATTAGCACGACACTCTAACCAACTGAGCTAATGGGCC 34327933 Score = 104 bits (114), Expect = 1e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||| ||||||||||||| ||||||| |||| Sbjct 36804913 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCA 36804972 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 36804973 ACTGAGCTAATGGGCC 36804988 Score = 102 bits (112), Expect = 4e-17 Identities = 75/88 (85%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||| |||| | |||||||||| | | |||||||| ||||||| ||||||||||||| Sbjct 37553616 ATATAAAAGAGATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACC 37553675 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 37553676 ACGCTCTAACCAACTGAGCTAATGGGCC 37553703 >seq5 Length=48169137 Score = 116 bits (128), Expect = 2e-21 Identities = 85/99 (86%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 11434 TAGAATTAATAAA---AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||||||||| ||| ||| ||| |||||||||| | | |||||||| ||||||| ||| Sbjct 20867240 TAGAATTAAAAAATGAAAAACAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCG 20867299 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||| |||||||||||||||||||| Sbjct 20867300 TTATTAGCACCACGCTCTAACCAACTGAGCTAATGGGCC 20867338 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 46990790 AATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 46990731 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 46990730 CAACTGAGCTAATGGGCC 46990713 Score = 104 bits (114), Expect = 1e-17 Identities = 74/85 (87%), Gaps = 2/85 (2%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| ||||||||| | | |||||| | ||||||||||||||||||||||| | Sbjct 20976887 AAAAA--AAAATGGCCCATGCAGGTCTCGAACATGCGACCTTCGCGTTATTAGCACGATG 20976944 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 20976945 CTCTAACCAACTGAGCTAATGGGCC 20976969 >seq1 Length=48359943 Score = 116 bits (128), Expect = 2e-21 Identities = 85/99 (86%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 11434 TAGAATTAATAAA---AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||||||||| ||| ||| ||| |||||||||| | | |||||||| ||||||| ||| Sbjct 38066191 TAGAATTAAAAAATGAAAAACAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCG 38066250 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||| |||||||||||||||||||| Sbjct 38066251 TTATTAGCACCACGCTCTAACCAACTGAGCTAATGGGCC 38066289 Score = 111 bits (122), Expect = 8e-20 Identities = 84/99 (85%), Gaps = 3/99 (3%) Strand=Plus/Plus Query 11434 TAGAATTAATAAA---AAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||||||||| ||| ||| ||| ||| |||||| | | |||||||| ||||||| ||| Sbjct 37538560 TAGAATTAAAAAATGAAAAACAATTTGACCCATGCAGGTCTCGAACCTGCGACCTTGGCG 37538619 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||| |||||||||||||||||||| Sbjct 37538620 TTATTAGCACCACGCTCTAACCAACTGAGCTAATGGGCC 37538658 Score = 107 bits (118), Expect = 1e-18 Identities = 78/90 (87%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 11440 TAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||| ||||| ||| ||||||||| | | |||||| | |||||||||||||||||||| Sbjct 10110532 TAATTAAAAA--AAAATGGCCCATGCAGGTCTCGAACATGCGACCTTCGCGTTATTAGCA 10110475 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||| |||||||||||||||||||| Sbjct 10110474 CGATGCTCTAACCAACTGAGCTAATGGGCC 10110445 >seq8 Length=16477302 Score = 114 bits (126), Expect = 7e-21 Identities = 84/98 (86%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 11432 TATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 ||| ||| ||||| ||| |||||||||||| | | |||||||| ||||||| |||| Sbjct 5954360 TATGGAAAAAATAAGAAA---AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGT 5954416 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| |||||||||||||||||||| Sbjct 5954417 TATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 5954454 >seq4 Length=49191682 Score = 114 bits (126), Expect = 7e-21 Identities = 87/103 (84%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTT 11492 ||| |||||||||| | || ||||||||| | | |||||||| |||||||||| || Sbjct 43849231 AATAAATAAAAAATAATATAATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCATT 43849290 Query 11493 ATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGAC 11535 |||||||||||||||| |||||||||||||||||||| || || Sbjct 43849291 ATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCATCAAC 43849333 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| |||||||||| |||||||||| ||||||| ||||| Sbjct 3751113 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCATTATTAGCACAACGCTCTAACCAA 3751054 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 3751053 CTGAGCTAATGGGCC 3751039 >seq6 Length=59463898 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||| ||||||| || Sbjct 57839115 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACCACGCTCTAAC 57839056 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 57839055 CAACTGAGCTAATGGGCC 57839038 Score = 109 bits (120), Expect = 3e-19 Identities = 80/93 (86%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||| |||||||| | ||||||||||| | | |||||||| ||||||| ||||||||| Sbjct 9735778 AATAAATAAAAATT---ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTA 9735834 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||||| |||||||||||||||||||| Sbjct 9735835 GCACCACGCTCTAACCAACTGAGCTAATGGGCC 9735867 >seq514 Length=339225 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Plus Query 11444 AAAAAATCA-AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 ||| || || || ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 330141 AAATAAACATAACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 330200 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 | |||| |||||||||||||||||||| Sbjct 330201 CACTCTAACCAACTGAGCTAATGGGCC 330227 >seq7 Length=48961560 Score = 105 bits (116), Expect = 3e-18 Identities = 76/87 (87%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| || || | ||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 19997596 AAAATATAAACAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 19997537 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 | |||| |||||||||||||||||||| Sbjct 19997536 CACTCTAACCAACTGAGCTAATGGGCC 19997510 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261468486792652