Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq6 95.1 1e-14 seq4 84.2 2e-11 >seq6 Length=59463898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||||||||||||||| || | || ||||| ||||| ||| | || || || Sbjct 20997746 AATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATCACCCTGGAGGTTGAATCATC 20997805 Query 115345 CGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || ||| | || ||| || ||| ||||| || || |||| |||||| Sbjct 20997806 GGATACAATTGATAATGTCAAAGCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCA 20997865 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || ||||||| ||| || || || | || |||| | |||| | |||||||| || Sbjct 20997866 GCAGAGGCTTATTTTTGCAGGGAAGCAGCTTGAGGATGGAAGAACCCTAGCCGATTACAA 20997925 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||| || || || || || | ||| |||| | ||||| |||| |||| Sbjct 20997926 CATACAGAAGGAATCCACCCTTCATTTGGTACTTCGATTGAGAGGTGGAA 20997975 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| || || ||||| | || || |||||||| ||| | || |||| | Sbjct 20997063 ATGCAAATCTTCGTGAAAACATTGACCGGCAAAACCATCACCCTTGAGGTGGAGAGTTCC 20997122 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | |||| || ||| || || || || ||||| |||| ||||| Sbjct 20997123 GATACCATAG-ACAACGTGAAAGCTAAGATCCAAGACAAGGAAGGGATCCCACCAGATCA 20997181 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||||||||||| | || || |||||||||||||||| | ||| | || ||||| || Sbjct 20997182 ACAAAGACTTATCTTCGCCGGTAAACAATTAGAAGATGGCCGTACCCTTGCTGATTACAA 20997241 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||| |||||||| || || | ||| | ||| | | ||| |||| || Sbjct 20997242 CATCCAAAAAGAATCCACCCTTCATTTAGTGCTTCGGTTGAGAGGTGG 20997289 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || ||||| || |||| ||||||||| || ||||| | ||| || |||||| | || Sbjct 20997384 GACAAAGAGGGTATCCCTCCTGATCAGCAGAGGCTTATCTTTGCAGGGAAACAACTTGAG 20997443 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| | |||| | || ||||| ||||| || ||||||||||| | ||| ||||| | Sbjct 20997444 GATGGTAGAACCCTAGCTGATTACAACATCCAGAAAGAGTCTACCCTTCATTTGGTGCTT 20997503 Query 115499 AGATTGCGAGGAGG 115512 ||||| |||| || Sbjct 20997504 CGATTGAGAGGTGG 20997517 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||| || || || || || || || |||||| | ||| ||| | Sbjct 20998431 ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTAGAAGTGGAAAGCTCT 20998490 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || ||| ||| ||| ||||| || || | ||| |||||| Sbjct 20998491 GACACAATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATTCCCCCAGATCAG 20998550 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 ||||| ||||||| ||| ||||| || || || |||| || |||| ||||| || Sbjct 20998551 CAAAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAAT 20998610 Query 115466 ATTCAAAAAGAGTCTAC 115482 ||||| ||||| ||||| Sbjct 20998611 ATTCAGAAAGAATCTAC 20998627 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCC 115342 ||||||||||||||| || || | || ||||| || ||||| | || | |||| | Sbjct 20997974 AATGCAAATTTTTGTTAAGACTTTGACAGGAAAGACTATTACTTTGGAGGTAGAGAGTTC 20998033 Query 115343 AGCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 || | ||| ||| | || ||| || ||| ||||| || || |||| ||| Sbjct 20998034 AG--ATACTATTGATAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATCCCACCAGAT 20998091 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| || ||||| | ||| || ||||| | ||||||| | || | ||||||||| Sbjct 20998092 CAGCAGAGGCTTATCTTTGCTGGTAAACAGCTTGAAGATGGAAGGACTCTTGCCGATTAT 20998151 Query 115463 AACATTCAAAAAGAGTCTAC 115482 ||||| ||||| ||||| || Sbjct 20998152 AACATCCAAAAGGAGTCCAC 20998171 >seq4 Length=49191682 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || || |||||||| || || || |||||||| || | ||| || ||| | Sbjct 19846855 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACCATAACGCTAGAAGTAGAATCCTCC 19846796 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | | |||| || ||| ||||| || |||||||| | || ||||| Sbjct 19846795 GACACAATCG-ACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCGGATCA 19846737 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| | | || | || || ||||| |||||||| | | ||| | || |||||||| Sbjct 19846736 GCAGCGGTTGATCTTCGCCGGAAAACAGTTAGAAGACGGGAGAACACTTGCAGATTATAA 19846677 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||||| ||||||||||| Sbjct 19846676 TATTCAGAAAGAGTCTAC 19846659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425307054487240