Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 7e-16 seq5 93.3 3e-14 seq4 89.7 4e-13 >seq6 Length=59463898 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || || | || || || ||||| || | || ||| | | Sbjct 17145887 ATGCAAATATTTGTGAAGACTCTCACCGGAAAGACCATCACTCTTGAGGTGGAGAGCTCT 17145946 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| || |||||||| | || | ||||| Sbjct 17145947 GATACCATCGACAATGTAAAGGCTAAGATTCAGGACAAAGAGGGCATTCCACCAGACCAA 17146006 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||||||||| || |||||| |||| |||| |||||||| Sbjct 17146007 CAGAGGCTCATCTTTGCTGGCAAACAGCTTGAAGATGGCCGAACTTTGGCAGATTACAAC 17146066 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| || || || || ||| |||| | ||| | || || || Sbjct 17146067 ATTCAGAAAGAGTCCACCCTCCATTTGGTGCTTCGTCTCCGTGGTGG 17146113 Score = 98.7 bits (108), Expect = 7e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| | || || || || || || ||||| ||| |||| ||| | | Sbjct 20997746 AATGCAAATTTTTGTCAAGACTTTGACAGGAAAGACCATCACCCTGGAGGTTGAATCATC 20997805 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | || || ||| ||||| |||||| | ||| | || Sbjct 20997806 GGATACAATTGATAATGTCAAAGCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGATCA 20997865 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| ||||| ||||| || || || || || ||| || ||| | ||||||||||| Sbjct 20997866 GCAGAGGCTTATTTTTGCAGGGAAGCAGCTTGAGGATGGAAGAACCCTAGCCGATTACAA 20997925 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || ||||||||||| || |||||| ||||| | || || |||| ||| Sbjct 20997926 CATACAGAAGGAATCCACCCTTCATTTGGTACTTCGATTGAGAGGTGGA 20997974 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| ||||| |||| || || || || |||||||| ||| | || ||| | | Sbjct 20997291 ATGCAGATATTCGTTAAGACCTTGACCGGAAAAACCATCACCCTTGAGGTTGAATCGTCT 20997350 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| || || || ||||||||| | ||| | || Sbjct 20997351 GATACGATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGTATCCCTCCTGATCAG 20997410 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||| || |||||||| || ||| | ||| | || |||||||| Sbjct 20997411 CAGAGGCTTATCTTTGCAGGGAAACAACTTGAGGATGGTAGAACCCTAGCTGATTACAAC 20997470 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || ||||| |||||| |||| | || || |||| || Sbjct 20997471 ATCCAGAAAGAGTCTACCCTTCATTTGGTGCTTCGATTGAGAGGTGG 20997517 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| ||| |||| || || || || || || ||||| |||| || | Sbjct 20997974 AATGCAAATTTTTGTTAAGACTTTGACAGGAAAGACTATTACTTTGGAGGTAGAGAGTTC 20998033 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | || | || || ||| ||||| |||||| | || | | || Sbjct 20998034 AGATACTATTGATAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATCCCACCAGATCA 20998093 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| |||||||||||||| ||||| || |||||| || ||| | |||||||| || Sbjct 20998094 GCAGAGGCTTATCTTTGCTGGTAAACAGCTTGAAGATGGAAGGACTCTTGCCGATTATAA 20998153 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACG 22048 || || ||||| || || ||||| |||| ||||| Sbjct 20998154 CATCCAAAAGGAGTCCACACTTCACTTGGTTTTACG 20998189 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || ||| | || || || || |||||| | ||| |||| | | Sbjct 20998431 ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTAGAAGTGGAAAGCTCT 20998490 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||| ||| ||||| |||||| | || | | || Sbjct 20998491 GACACAATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATTCCCCCAGATCAG 20998550 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || ||||| ||||||||||| || | || ||| ||| |||| ||||||||| Sbjct 20998551 CAAAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAAT 20998610 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| |||||||| || || Sbjct 20998611 ATTCAGAAAGAATCTACCCTGCA 20998633 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/94 (81%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||||||||| || || |||||||||||||| || || ||| |||| | || |||| Sbjct 17161560 ACCAACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAGGATGGCCGAACTTTAGCAGATT 17161619 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||||| ||||| || |||||| |||| Sbjct 17161620 ACAATATTCAGAAAGAATCCACCCTTCATTTGGT 17161653 Score = 89.7 bits (98), Expect = 4e-13 Identities = 160/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || || || || || ||||| || |||| |||| || Sbjct 17162129 ATGCAGATCTTTGTAAAGACTTTGACAGGAAAGACCATAACTTTGGAGGTGGAAAGTTCA 17162188 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||||||| || || ||||| | || | | || Sbjct 17162189 GACACAATTGACAATGTAAAGGCAAAAATTCAAGACAAGGAGGGAATCCCACCAGATCAG 17162248 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | ||||||||||| || ||| | || ||| || || | || || ||||| Sbjct 17162249 CAAAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACCCTAGCTGACTACAAC 17162308 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAA 22067 ||||||||||| ||||||||||| | || || ||| | || || |||| |||| Sbjct 17162309 ATTCAGAAGGAGTCTACTCTTCACCTCGTGTTGCGTCTTCGTGGTGGATTTTAA 17162362 Score = 82.4 bits (90), Expect = 5e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| |||| || || || || || ||||||||| | || ||| | | Sbjct 20997519 ATGCAAATTTTTGTTAAGACTTTGACAGGGAAGACCATTACCCTCGAGGTTGAATCTTCT 20997578 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | || || || || ||||||||| | ||| | || Sbjct 20997579 GATACGATTGATAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCTCCTGATCAG 20997638 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||| || || || ||| | |||||| || | || ||||||||| Sbjct 20997639 CAGAGGCTTATCTTCGCCGGTAAGCAATTGGAAGATGGTCGCACCCTAGCTGATTACAAT 20997698 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 || || |||||||| || |||||| ||||| | || || Sbjct 20997699 ATCCAAAAGGAATCCACCCTTCATTTGGTACTTCGATT 20997736 >seq5 Length=48169137 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | ||||| |||| ||||||||||||||| | || || | Sbjct 36920510 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATTACCCTAGAGGTAGAGAGTTCC 36920569 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| ||||||| || || |||||| | ||| | |||| Sbjct 36920570 GATACAATCGACAACGTGAAGGCAAAAATTCAAGACAAGGAGGGTATTCCTCCAGACCAG 36920629 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | ||||| || || |||||| ||||||| || || |||| ||||||||| Sbjct 36920630 CAACGATTGATCTTCGCCGGAAAACAATTAGAAGACGGAAGGACACTGGCGGATTACAAT 36920689 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || || |||||||| || |||||| |||| Sbjct 36920690 ATCCAAAAGGAATCAACGCTTCATTTGGT 36920718 >seq4 Length=49191682 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| | || || ||||||| || || ||||| |||| ||| | Sbjct 19846628 AATGCAGATTTTTGTGAAGACGCTAACGGGGAAGACGATTACTTTGGAGGTGGAGAGTTC 19846569 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | || | || || ||| ||||| ||||| | || | || Sbjct 19846568 TGATACGATTGATAATGTGAAAGCGAAGATTCAAGATAAGGAGGGAATTCCACCGGATCA 19846509 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| | ||||| |||||||| |||||||| |||||| | ||| | || ||||| || Sbjct 19846508 ACAGCGTCTTATTTTTGCTGGTAAACAACTTGAAGATGGACGCACTCTTGCTGATTATAA 19846449 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 |||||||||||||||||| ||||| Sbjct 19846448 TATTCAGAAGGAATCTACACTTCA 19846425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358093693167958