Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 111 2e-19 seq4 98.7 1e-15 seq5 96.9 4e-15 >seq6 Length=59463898 Score = 111 bits (122), Expect = 2e-19 Identities = 159/220 (72%), Gaps = 8/220 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||||||||| | || ||| ||||| || ||||||||||| || || ||| | Sbjct 17161432 ACGGAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCAAGGGTACGCCC 17161373 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || || || ||||| ||||||||||| | ||| | || ||||| Sbjct 17161372 ATCCTCCAGCTGCTTGCCTGCAAAAATGAGACGCTGCTGGTCTGGTGGGATGCCTTCCTT 17161313 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCG 42168 || | ||| | || | | | | | | | | || || ||| || || |||| | Sbjct 17161312 GT-CTTGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTC---TCAACTTCGAGAG 17161257 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||||||||| || || ||||| ||||| |||||||| Sbjct 17161256 TGATGGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 17161217 Score = 102 bits (112), Expect = 9e-17 Identities = 154/215 (72%), Gaps = 8/215 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||||||| | ||| || || |||||||||||||| || | ||| || | || || Sbjct 17161654 CACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAATCTGCTAAAGTTCGGCCATCCTC 17161595 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 ||||| || ||||| || ||||| | ||| ||||| | ||| | ||||||||||||| | Sbjct 17161594 AAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGAATGCTCTCCTTGTCC-T 17161536 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || | || | |||| | | | || || ||| |||||| || | ||||| | Sbjct 17161535 GAATCTTGGCCTTGACATTGTCAATAGTATCAGAGCT---TTCCACCTCAAGGGTGATCG 17161479 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || || || || ||||| || |||||||||||| Sbjct 17161478 TCTTTCCAGTGAGAGTCTTCACGAAGATTTGCATT 17161444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || || || | |||||||| | ||| |||||||| |||||||||||||| Sbjct 20997745 CCGCCCCTCAATCGAAGTACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAATCAGCT 20997686 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || | |||||||| ||||| || || | |||||| || | || Sbjct 20997685 AGGGTGCGACCATCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCAGGAGGG 20997626 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | | ||| |||||| ||| || ||||| | | | ||| || ||||| || Sbjct 20997625 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTATCAATCGTATCAGAAGATTCAACC 20997566 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| || ||||| || || || | ||||| ||||| |||||||| Sbjct 20997565 TCGAGGGTAATGGTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCAT 20997519 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 |||||| || | ||| | || |||||||||||| |||||||| |||| || || | Sbjct 17146330 ACGCAAAACAAGATGGAGAGTTGACTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGTCC 17146271 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| ||||| || || | | |||||||| | ||| | || ||| || Sbjct 17146270 ATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGGAATGCCCTCTTT 17146211 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCG---CTCGATTCCACATCGACCGT 42169 ||| || ||| |||| | | | ||||| ||| || || || | || Sbjct 17146210 GTCTTGTATCTTTGCCTTGACATTGTCTATGGTGTCAGAACTC---TCTACCTCAAGTGT 17146154 Query 42170 GATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || || || ||||| |||||||||||||| Sbjct 17146153 GATGGTCTTTCCTGTGAGGGTCTTGACAAAGATTTGCAT 17146115 Score = 86.0 bits (94), Expect = 7e-12 Identities = 160/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| || || | ||| ||||| | ||| || ||||| || ||||||||||| Sbjct 20997289 CCACCTCTCAACCGAAGCACTAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGCA 20997230 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || |||| || ||||| ||||| || |||| || || || | ||| Sbjct 20997229 AGGGTACGGCCATCTTCTAATTGTTTACCGGCGAAGATAAGTCTTTGTTGATCTGGTGGG 20997170 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTC 42157 | | |||||||| ||| || ||| | ||| | | | || ||| ||| || Sbjct 20997169 ATCCCTTCCTTGTCTTGGATCTTAGCTTTCA-CGTTGTCTATGGTATCGGAACTC---TC 20997114 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | |||||||||||||| || | || || || ||||||||||| Sbjct 20997113 CACCTCAAGGGTGATGGTTTTGCCGGTCAATGTTTTCACGAAGATTTGCAT 20997063 Score = 82.4 bits (90), Expect = 8e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | | ||||||||| || | ||| |||||||| || || ||||| || Sbjct 24381207 CCTCCTCTGAGCCTCAACACCAAGTGAAGTGTTGATTCCTTTTGTATGTTATAATCTGCA 24381266 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||| || | || || |||||||||||||| || || | | ||||||||| | || Sbjct 24381267 AGAGTGCGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGAGGG 24381326 Query 42102 ACGCTCTCCTTGTCC 42116 | | ||||||||| Sbjct 24381327 ATACCTTCCTTGTCC 24381341 >seq4 Length=49191682 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || |||||||| ||||| || || || | | |||| |||| ||| || || ||||| Sbjct 19846664 CTCTTTCTGAATATTATAATCTGCAAGTGTTCTCCCGTCTTCTAACTGTTTTCCGGCGAA 19846723 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | |||||||| || | ||| | | || ||||| |||||| ||| | ||| Sbjct 19846724 GATCAACCGCTGCTGATCCGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTCA-CGT 19846782 Query 42137 CGCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | |||||| ||||| || || | ||| ||||||||||| ||||| || || | Sbjct 19846783 TGTCGATTGTGTCGGAGGATTCTACTTCTAGCGTTATGGTTTTGCCGGTTAGGGTTTTGA 19846842 Query 42196 CAAAGATTTGCAT 42208 | ||||| ||||| Sbjct 19846843 CGAAGATCTGCAT 19846855 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| |||||||| |||||||| ||||| || | || || || || |||||||| || Sbjct 19846437 TCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAA 19846496 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 42136 || || ||||| || || | ||| | | |||||| || ||| | || | ||| | | Sbjct 19846497 ATAAGACGCTGTTGATCCGGTGGAATTCCCTCCTTATCT-TGAATCTTCGCTTTCACATT 19846555 Query 42137 CGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | ||| || ||| ||||| || | || || || || |||||||||||||| Sbjct 19846556 ATCAATCGTATCAGAACTC---TCCACCTCCAAAGTAATCGTCTTCCCCGTTAGCGTCTT 19846612 Query 42194 TACAAAGATTTGCATT 42209 ||||| || |||||| Sbjct 19846613 CACAAAAATCTGCATT 19846628 >seq5 Length=48169137 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||||||||| | || |||||||| ||||||||||| ||||| |||| |||| || Sbjct 36920719 CACCAAATGAAGCGTTGATTCCTTTTGGATATTGTAATCCGCCAGTGTCCTTCCGTCTTC 36920660 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || || || || ||||| || | ||| |||||||| | || | | |||||||| | | Sbjct 36920659 TAATTGTTTTCCGGCGAAGATCAATCGTTGCTGGTCTGGAGGAATACCCTCCTTGT-CTT 36920601 Query 42119 GATTTTTTGTTTGAGCGTCG-CCACCGTGTCG---CTCGATTCCACATCGACCGTGATGG 42174 || |||||| | ||| | | | || ||| ||| || || || | || |||| Sbjct 36920600 GAATTTTTGCCTTCACGTTGTCGATTGTATCGGAACTC---TCTACCTCTAGGGTAATGG 36920544 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| ||||| || || || ||||| ||||| Sbjct 36920543 TTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 36920510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543164406529680