Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 seq2 114 1e-20 seq4 87.8 2e-12 >seq6 Length=59463898 Score = 118 bits (130), Expect = 1e-21 Identities = 146/197 (74%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || |||||||||||| | ||| || ||| || | || || |||| Sbjct 9515668 TTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCCAACTGCTTTCCGG 9515727 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||||||||| || || || ||||| ||||| ||| ||| ||| | Sbjct 9515728 CGAAGATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTTGCTTTGA 9515787 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | ||||||| ||||||||||||| || | ||| ||||| || || ||| Sbjct 9515788 CATTG-TCGATTGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTACCCGTTAGGGTT 9515846 Query 138598 TTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 9515847 TTCACGAAGATCTGCAT 9515863 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | ||||||||||| |||||||| || | Sbjct 17145885 CCACCACGGAGACGGAGCACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAATCTGCC 17145826 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || ||||| || | | |||| || | ||||||||| || || Sbjct 17145825 AAAGTTCGGCCATCTTCAAGCTGTTTGCCCGCAAAGATGAGCCTCTGTTGGTCTGGTGGG 17145766 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | ||| |||| || | ||| || | ||| | Sbjct 17145765 ATGCCTTCCTTGTC-TTGAATCTTGGCCTTAACATTG-TCTATGGTATCTGAACTCTCAA 17145708 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || ||||| || || || || ||||| ||||| Sbjct 17145707 CCTCGAGAGTTATGGTCTTGCCAGTGAGGGTCTTAACGAAAATTTGCAT 17145659 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | | ||||| || ||||||||||| || | Sbjct 17146113 CCACCACGGAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 17146054 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || || ||||| || | | |||| || | ||||||||| || || Sbjct 17146053 AAAGTTCGGCCATCTTCAAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGA 17145994 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || |||||||| ||| | || | ||| |||| || | ||| || | ||||| Sbjct 17145993 ATGCCCTCTTTGTC-CTGAATCTTAGCCTTTACATTG-TCGATGGTATCAGAGCTCTCCA 17145936 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || ||||| || ||||| || ||||| Sbjct 17145935 CCTCAAGAGTGATGGTCTTTCCGGTGAGAGTCTTCACAAATATTTGCAT 17145887 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| ||| || | |||||||| | | | || || ||||| |||||||| || Sbjct 20997290 GCCACCTCTCAACCGAAGCACTAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGC 20997231 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| || || | ||||||||||| |||| || | ||||| || || || Sbjct 20997230 AAGGGTACGGCCATCTTCTAATTGTTTACCGGCGAAGATAAGTCTTTGTTGATCTGGTGG 20997171 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || ||| | | || | ||| |||| |||||| Sbjct 20997170 GATCCCTTCCTTGTCTTGGATCTTAGCTTTCACGTTGTCTATGGTATCGGAACTCTCCAC 20997111 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | ||||| || |||| ||||| || || || ||||| Sbjct 20997110 CTCAAGGGTGATGGTTTTGCCGGTCAATGTTTTCACGAAGATTTGCAT 20997063 >seq2 Length=36634854 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || |||||||||||| | ||| || ||| ||||||||||| |||| Sbjct 8273552 TTGATTCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCGAGTTGTTTTCCGG 8273493 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| || || ||||||||||| || || ||||| ||||| |||||| ||| | Sbjct 8273492 CGAAGATGAGTCGTTGTTGGTCCGGTGGAATCCCTTCCTTGTCTTGGATTTTGGCTTTGA 8273433 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||| | || || ||||||| || | |||||||| || || |||| Sbjct 8273432 CGTTGTCGATTGTGTCAGAGGATTCAACCTCGAGGGTGATTGTTTTACCCGTTAGGGTTT 8273373 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 8273372 TCACGAAGATCTGCAT 8273357 >seq4 Length=49191682 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| | ||||| |||||| || || || |||| Sbjct 14093575 TTGACTCCTTCTGGATGTTGTAGTCGGCAAGGGTACGGCCGTCCTCAAGCTGCTTTCCGG 14093634 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||| || ||||||||||| || ||||| ||||| ||| || |||| Sbjct 14093635 CGAAGATGAGACGTTGCTGGTCCGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTTA 14093694 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | || || | ||| ||||||| || | || || || || || |||| Sbjct 14093695 CGTTATCGATAGTATCAGAACTCTCTACCTCGAGAGTGATTGTCTTGCCGGTGAGGGTTT 14093754 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 14093755 TCACGAAGATTTGCAT 14093770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496218189223440