Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 114 2e-20 seq4 105 8e-18 seq7120 84.2 3e-11 seq5 84.2 3e-11 >seq1 Length=48359943 Score = 114 bits (126), Expect = 2e-20 Identities = 279/417 (67%), Gaps = 12/417 (3%) Strand=Plus/Minus Query 12734 GTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAA 12793 ||| || || ||| | ||| || || || ||||||| ||| || || | || || Sbjct 19053856 GTCGAGAATGTCAGCCCTGTTGGTTGCTGCAATGACAATGATTCCGGTATTACCCTCAAA 19053797 Query 12794 GCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCAT 12853 |||||||| || ||||| ||||| |||| ||| ||||| | |||||||||| | Sbjct 19053796 TCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCCCTTTCATCATTCCCTCC--- 19053740 Query 12854 ACCACCCGCACTGC---GTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACA 12910 |||| || ||| ||||| | || || || || ||||| |||| ||||| ||||| Sbjct 19053739 ACCAATTCCAGTGCCTCGTTGCCTTCCTACAGCATCGATTTCATCAACAAAAACAATACA 19053680 Query 12911 CGGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 || ||| || || |||| || | |||||| |||| ||||| ||||| Sbjct 19053679 AGGAGCATTCTCTTTTGC--CTTCTTGAATAAATCTCGAACTCGAGAAGCACCAACACCA 19053622 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACC 13027 ||||||||||| ||||| | | | | | |||| || || || ||| | |||||| Sbjct 19053621 ACAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAATGGAACGCCTGCTTCACC 19053563 Query 13028 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACC 13087 || || || ||| | | |||||||| ||||| ||| || ||||||| | || Sbjct 19053562 AGCAATAGCCTTGGCTAATAACGTCTTCCCAGTCCCCGGTGGACCTACGAGAAGAACTCC 19053503 Query 13088 ACGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCAC 13144 ||| || | |||||| | || | | | ||| || | ||||||||| ||||| Sbjct 19053502 TTTTGGAATGCGAGCACCAATAGCAGTGAACCTCTCAGGCTTTTTAAGAAACTCCAC 19053446 >seq4 Length=49191682 Score = 105 bits (116), Expect = 8e-18 Identities = 275/411 (67%), Gaps = 35/411 (9%) Strand=Plus/Plus Query 32390 CACTTTGCCGCACAAAGTCATGTGGACAACTCATTTATAAGTCCACTTGGTTTCACATTA 32449 || ||||| || |||| |||||| ||||| |||||| || || | | ||||||| Sbjct 41130897 CATTTTGCTGCTCAAACTCATGTTGACAATTCATTTGGAAACTCAATGGAATTCACATAT 41130956 Query 32450 GATAATACATACGGAACACACGCACTTGTTGAAATGTGTAGAAGGCATACACCAAATGT- 32508 | || | |||||||||||| | ||| | ||| || || ||| |||| || ||| Sbjct 41130957 AACAACATATACGGAACACATGTTCTTCTAGAAGCATGCAG--GGC-TACA--AATTGTG 41131011 Query 32509 ----AGAGTTCATACATTTTAGTACGGATGAAGTATACGGCGAATC------AAAAACGG 32558 | |||||| ||| ||||||| |||||||| || || ||| | | | || | Sbjct 41131012 TTAAAAGGTTCATTCATGTTAGTACTGATGAAGTTTATGGTGAAACTGATTTAGATACTG 41131071 Query 32559 AC----GAACCATTCACAGAGGAAACCGGTGTACTTAGACCAACAAATCCGTATTCAGCA 32614 | | | |||| ||||| | |||| |||||||||||| |||||||| Sbjct 41131072 ATATTGGTAACATT-------GAAACATCTCAACTTTTACCAACAAATCCTTATTCAGCT 41131124 Query 32615 TCAAAGGCAGCCGCCGAAATGATAATCC--GCTCATACATAGAATCATTTGATATG--AA 32670 |||| |||| || |||||| | | ||| || |||||| || | || | | || Sbjct 41131125 ACAAAAGCAGGTGCTGAAATGTTGGTTATGGCTTAT-CATAGA-TCTTATGGTCTTCCAA 41131182 Query 32671 TATCAAGATTATTCGCTGTAATAATGTATATGGCCCAAATCAATATCCGGAAAAACTCAT 32730 || || || | | | |||||||| ||||| || ||||||||||| |||||||| | Sbjct 41131183 TAATAACATC--TAGAGGAAATAATGTTTATGGTCCTAATCAATATCCTGAAAAACTTGT 41131240 Query 32731 TCCAAAGTTTATACGACTACTGAAAAATAATGAGAAATGTACAATTCATGG 32781 ||| |||||||| | ||| | || |||||||| | |||||||| Sbjct 41131241 TCCTAAGTTTATTCTTCTAGCTATGAAAGGTGAGAAATTGCCTATTCATGG 41131291 >seq7120 Length=14710 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 177718 AAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCACCAACAAT 177777 |||||| | || |||| ||||| | ||| ||||| || ||||| ||||||||| | | Sbjct 6376 AAACTCAGTCGAAAAGATATTCGTGAGCTTCGCACCATAACCATTACGTCCACCAGTAGT 6317 Query 177778 TCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAG 177826 | ||||| || ||||||||||| |||| || ||||||||||| ||| Sbjct 6316 TTTCTTCACATTATCATCGTAGTTACTACTAGTAAGAAGGTGACCGAAG 6268 >seq5 Length=48169137 Score = 84.2 bits (92), Expect = 3e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 177718 AAACTCCGAGGAGTAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCACCAACAAT 177777 |||||| | || |||| ||||| | ||| ||||| || ||||| ||||||||| | | Sbjct 17100777 AAACTCAGTCGAAAAGATATTCGTGAGCTTCGCACCATAACCATTACGTCCACCAGTAGT 17100836 Query 177778 TCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGAAGGTGACCAAAG 177826 | ||||| || ||||||||||| |||| || ||||||||||| ||| Sbjct 17100837 TTTCTTCACATTATCATCGTAGTTACTACTAGTAAGAAGGTGACCGAAG 17100885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613452544177320