Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 6e-13 seq6 87.8 2e-12 >seq4 Length=49191682 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | || ||||| | ||| ||||| |||||||||||||||| Sbjct 14093316 CCTCCACGAAGACGGAGGACGAGATGAAGGGTAGATTCCTTCTGGATATTGTAGTCGGCG 14093375 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || || ||||| |||||||| || | | ||||||||| | || Sbjct 14093376 AGGGTACGACCGTCCTCAAGTTGCTTTCCGGCGAAGATAAGTCTCTGCTGGTCCGGGGGA 14093435 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCG-TCGCCACCGTGTCGCTCGATTCCAC 46545 | | |||||||| |||||| ||| | || | | | |||||| ||| || Sbjct 14093436 ATTCCTTCCTTGTCTTGGATCTT-GGCTTTAACGTTATCGATGGTGTCGGAGCTTTCGAC 14093494 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || | |||||||| ||||| || || || || || ||||| ||||| Sbjct 14093495 CTCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 14093542 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | ||| |||||| ||||| ||||| || | || || | | Sbjct 14092871 ACGCAACACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAATCAGCGAGGGTCCTTCC 14092930 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| |||||||| ||||| | |||||| || | || | | ||||| Sbjct 14092931 ATCTTCCAGCTGCTTTCCGGCGAAGATCAACCTCTGCTGATCTGGGGGAATACCTTCCTT 14092990 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCG---CTCGATTCCACATCCACCG 46553 ||| |||||| ||| | ||| | | | ||||| ||| ||||| || | | Sbjct 14092991 ATCCTGGATCTTGGCCTTAA-CGTTGTCGATTGTGTCAGAACTC---TCCACCTCAAGGG 14093046 Query 46554 TGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || ||||| || || || || || || ||||||||||| Sbjct 14093047 TAATAGTTTTACCAGTGAGGGTCTTCACGAAGATTTGCAT 14093086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||| | ||| ||| || || ||||| || || | || || | | |||| || Sbjct 19846647 ACAAGATGAAGCGTAGACTCTTTCTGAATATTATAATCTGCAAGTGTTCTCCCGTCTTCT 19846706 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | ||| || |||||||| ||||| |||||||| || | || | | || ||||| | Sbjct 19846707 AACTGTTTTCCGGCGAAGATCAACCGCTGCTGATCCGGTGGAATTCCTTCTTTGTCTTGG 19846766 Query 46505 ATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 || || || | ||| | | | |||||| ||||| || || | ||| |||||||| Sbjct 19846767 ATTTTGGCTTTCA-CGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGCGTTATGGTTTT 19846825 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || || ||||| || ||||| ||||| Sbjct 19846826 GCCGGTTAGGGTTTTGACGAAGATCTGCAT 19846855 >seq6 Length=59463898 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||||||||| || | ||| ||||| | || || | ||||| |||||||| Sbjct 20997709 TCCTTTTGGATATTGTAATCAGCTAGGGTGCGACCATCTTCCAATTGCTTACCGGCGAAG 20997650 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | |||||| || | || | | ||| |||||| |||||| |||| | Sbjct 20997649 ATAAGCCTCTGCTGATCAGGAGGGATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTA 20997590 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||| || ||||| || || | || ||||| || || |||| || |||||| Sbjct 20997589 TCAATCGTATCAGAAGATTCAACCTCGAGGGTAATGGTCTTCCCTGTCAAAGTCTTAACA 20997530 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 20997529 AAAATTTGCAT 20997519 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| || || | ||||| ||| | ||| ||| || ||||| ||||| || | Sbjct 20997519 TGCCACCTCTCAATCGAAGCACCAAATGAAGGGTAGACTCTTTCTGGATGTTGTAATCAG 20997460 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 ||| || | | || || || || || || || || || | | |||||| || | | Sbjct 20997459 CTAGGGTTCTACCATCCTCAAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAG 20997400 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||| |||||| |||||| ||||| | | | ||| || |||||| | Sbjct 20997399 GGATACCCTCTTTGTCCTGGATCTTGGCCTTGACATTATCAATCGTATCAGACGATTCAA 20997340 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | ||||||||||| || |||| || ||||| || || ||||| Sbjct 20997339 CCTCAAGGGTGATGGTTTTTCCGGTCAAGGTCTTAACGAATATCTGCAT 20997291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565188044324040