Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6 104 2e-17 seq4 89.7 4e-13 seq5 87.8 1e-12 >seq6 Length=59463898 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| |||||||| ||||| |||| || || | ||||||||| | || | ||||| | Sbjct 17146955 CATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATTCCTTCCT 17146896 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 |||| ||||||| ||| | | | | |||||||| ||||| || |||||||||| Sbjct 17146895 TGTCCTGTATTTTTGCTTTGACATTATCGATTGTGTCTGAACTTTCTACCTCCAAAGTAA 17146836 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || || ||||| || || ||||||||||| Sbjct 17146835 TGGTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCAT 17146799 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 ||||| |||||||| ||| || || ||||||||||| |||| | ||| |||| ||| Sbjct 20998411 ACCAAGTGCAAAGTAGATTCCTTCTGGATATTATAATCAGCCAGAGTACGTCCATCCTCC 20998352 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 || || || ||| ||||||||| | ||||||||| | || | || |||||||| Sbjct 20998351 AACTGCTTGCCGGCAAAAATTAGCCTCTGCTGATCTGGAGGAATACCCTCTTTGTCCTGA 20998292 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 ||||| || | | ||| ||| || | ||||| || |||||||| ||||| || Sbjct 20998291 ATTTTCGCCTTCACATTATCTATTGTATCAGAACTTTCAACCTCCAAAGTTATTGTCTTT 20998232 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || || || || || ||||| Sbjct 20998231 CCGGTAAGGGTCTTGACAAAAATTTGCAT 20998203 Score = 93.3 bits (102), Expect = 3e-14 Identities = 118/159 (74%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| |||||||| ||||| |||| || || | |||||||| | || | || || | Sbjct 17162285 CATCCTCCAATTGCTTCCCAGCAAAGATCAACCTTTGCTGATCTGGTGGGATTCCCTCCT 17162226 Query 39623 TGTCGCATATTTTTTG-TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGT 39680 |||| |||||| |||| || ||| | |||||||| |||||||| |||||||| Sbjct 17162225 TGTCTTGAATTTTTGCCTTTACATTGTCAAT--TGTGTCTGAACTTTCCACCTCCAAAGT 17162168 Query 39681 AATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || ||||| ||||| ||||||||||| Sbjct 17162167 TATGGTCTTTCCTGTCAAAGTCTTTACAAAGATCTGCAT 17162129 >seq4 Length=49191682 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/197 (71%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA----TCGTCCAATTGTTTCCCGCC 39584 ||||| || ||||||||||| || | | |||| || || || ||||| ||| | Sbjct 19846665 TCTTTCTGAATATTATAATCTGCAA----GTGTTCTCCCGTCTTCTAACTGTTTTCCGGC 19846720 Query 39585 AAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAAT 39644 || || || ||||||||||||| || | ||||||||||| ||||| ||| | Sbjct 19846721 GAAGATCAACCGCTGCTGATCCGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTCA- 19846779 Query 39645 CGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTT 39703 ||| | | | |||||| | | ||| || || | || || ||||| || |||| |||| Sbjct 19846780 CGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGCGTTATGGTTTTGCCGGTTAGGGTTT 19846839 Query 39704 TTACGAAGATCTGCATG 39720 | ||||||||||||||| Sbjct 19846840 TGACGAAGATCTGCATG 19846856 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39528 TTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAA 39587 ||| || || ||||||||||| || | | |||| |||| || | |||||| || |||| Sbjct 19846436 TTCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAA 19846495 Query 39588 AATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGT 39647 ||| | |||||| ||||||| || | || || || || || || ||| | | Sbjct 19846496 AATAAGACGCTGTTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTCGCTTTCACATT 19846555 Query 39648 CGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | || || | || ||||| ||||||||||| || || ||||||| || || || Sbjct 19846556 ATCAATCGTATCAGAACTCTCCACCTCCAAAGTAATCGTCTTCCCCGTTAGCGTCTTCAC 19846615 Query 39708 GAAGATCTGCAT 39719 || |||||||| Sbjct 19846616 AAAAATCTGCAT 19846627 >seq5 Length=48169137 Score = 87.8 bits (96), Expect = 1e-12 Identities = 162/234 (69%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| ||||| || | || || |||||||| | || ||| ||||| ||||| |||| Sbjct 36920740 CATC-CCGCCGCGAAGTCGAAGCACCAAATGAAGCGTTGATTCCTTTTGGATATTGTAAT 36920682 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | |||| | | | || || |||||||| ||| | || || || || ||||| || | Sbjct 36920681 CCGCCAGTGTCCTTCCGTCTTCTAATTGTTTTCCGGCGAAGATCAATCGTTGCTGGTCTG 36920622 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | || || ||||| |||||| || | ||| | | | ||| || | || Sbjct 36920621 GAGGAATACCCTCCTTGTCTTGAATTTTTGCCTTCA-CGTTGTCGATTGTATCGGAACTC 36920563 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || || | ||||| ||||| || |||| ||||| ||||||||||||||| Sbjct 36920562 TCTACCTCTAGGGTAATGGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATG 36920509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347339427367991