Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq55 192 7e-44 seq104 118 1e-21 seq6 109 6e-19 seq5 109 6e-19 seq7 82.4 9e-11 >seq55 Length=606834 Score = 192 bits (212), Expect = 7e-44 Identities = 400/591 (68%), Gaps = 10/591 (2%) Strand=Plus/Minus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 |||||| |||||||||||||| ||||| ||||| | || | || || ||||| || Sbjct 250256 CAAACAAGCAAAATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGT 250197 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 |||||||||||| | || | |||||| | ||| || || | | || ||||| || Sbjct 250196 TAAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTACCAGAGAA 250137 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 || |||||||| || ||||||||||| | |||||| || ||| | ||| Sbjct 250136 AAAAATACCTTCAACGCAAGCAAAAGCAACGATTCTTTCAGCA-AAC--GAATCCGACGA 250080 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 || |||||||||| |||||||| || ||||| | ||| || || ||||| |||| Sbjct 250079 ATCGATCCATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGC 250020 Query 19197 ATTAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253 || ||| | ||| | | |||| | | ||| | | ||| | || | | | ||| Sbjct 250019 ATGAAACAAACGATTCTT---CTCAACCGAATCGCTTATATACGTTTCAAGAAGGAGACT 249963 Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 |||||||| ||||| ||||| || || || || ||||| ||||||||| | || || Sbjct 249962 ATACATTTCAGAATGTATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCGCCTC 249903 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 || | || ||||| | |||||| | | | ||| || ||| || || || Sbjct 249902 TGAAACTTGAACTTCTTTCATGAATCTTCCAGCAAGATTCTCTAAAACGATGCCGTCGGA 249843 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT 19433 || || |||||||| | || || | ||| ||| ||| | ||||| | || Sbjct 249842 TGCGGCGAAAAATGCAAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAATTGTT 249783 Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||||| | || ||||| |||||||| |||||||| | ||||| || || || || || Sbjct 249782 CCAATGTTGAAGATCTTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGC 249723 Query 19494 TTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||||| ||||| | ||| || | | | |||| || || || || ||||| Sbjct 249722 TTTTTTGTACATTTCCCAAATTTTAGGGTATTCAATTGGGAACAT-ACAAA 249673 Score = 192 bits (212), Expect = 7e-44 Identities = 400/591 (68%), Gaps = 10/591 (2%) Strand=Plus/Minus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 |||||| |||||||||||||| ||||| ||||| | || | || || ||||| || Sbjct 258939 CAAACAAGCAAAATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGT 258880 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 |||||||||||| | || | |||||| | ||| || || | | || ||||| || Sbjct 258879 TAAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTACCAGAGAA 258820 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 || |||||||| || ||||||||||| | |||||| || ||| | ||| Sbjct 258819 AAAAATACCTTCAACGCAAGCAAAAGCAACGATTCTTTCAGCA-AAC--GAATCCGACGA 258763 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 || |||||||||| |||||||| || ||||| | ||| || || ||||| |||| Sbjct 258762 ATCGATCCATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGC 258703 Query 19197 ATTAAATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253 || ||| | ||| | | |||| | | ||| | | ||| | || | | | ||| Sbjct 258702 ATGAAACAAACGATTCTT---CTCAACCGAATCGCTTATATACGTTTCAAGAAGGAGACT 258646 Query 19254 GTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTC 19313 |||||||| ||||| ||||| || || || || ||||| ||||||||| | || || Sbjct 258645 ATACATTTCAGAATGTATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCGCCTC 258586 Query 19314 TGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACT 19373 || | || ||||| | |||||| | | | ||| || ||| || || || Sbjct 258585 TGAAACTTGAACTTCTTTCATGAATCTTCCAGCAAGATTCTCTAAAACGATGCCGTCGGA 258526 Query 19374 AGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT 19433 || || |||||||| | || || | ||| ||| ||| | ||||| | || Sbjct 258525 TGCGGCGAAAAATGCAAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAATTGTT 258466 Query 19434 CCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGC 19493 ||||| | || ||||| |||||||| |||||||| | ||||| || || || || || Sbjct 258465 CCAATGTTGAAGATCTTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGC 258406 Query 19494 TTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||||| ||||| | ||| || | | | |||| || || || || ||||| Sbjct 258405 TTTTTTGTACATTTCCCAAATTTTAGGGTATTCAATTGGGAACAT-ACAAA 258356 >seq104 Length=244920 Score = 118 bits (130), Expect = 1e-21 Identities = 252/372 (68%), Gaps = 6/372 (2%) Strand=Plus/Plus Query 18958 AAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTT 19017 ||||| || ||||||||||| ||||| ||||| | || | || || ||||| ||| Sbjct 172064 AAACAAGCGAAATCACAATGAAGTCCTTCGTCACACAAAATAAGCTCGTTTGAAAAAGTT 172123 Query 19018 AAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAG 19077 |||||| |||| | || | |||||| | ||| ||||| | | || | ||| || Sbjct 172124 AAACCATGCATTAAACCACGTTTTTTAAGCCAAAATATCGCACATAAACTACTAGAGAAA 172183 Query 19078 AATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATC-ATTATT 19136 || |||||||| || ||||||||||| | |||||| || | | | ||| | | Sbjct 172184 AAAATACCTTCAACGCAAGCAAAAGCAACGATTCTTTCAACA-ATCAA--ATCGACGA-- 172238 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 || |||||||||| |||||||| || ||||| | ||| || || ||||| |||| Sbjct 172239 ATCGATCCATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGC 172298 Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 || ||| | | | | |||| | ||| | | ||||| || | | | ||| || Sbjct 172299 ATGAAACAAACAATTCTTCTCAACCAAATCGCTTATATATGTTTCAAGAAGGAGACTATA 172358 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 |||||| ||||| ||||| || || || || || || | ||| ||| | ||||||| Sbjct 172359 CATTTCAGAATGTATATTCTCAATCGCGATTTGGAACCTGTAGAAAGCACGCGCTTCTGA 172418 Query 19317 TATCTGTACTTC 19328 | || ||||| Sbjct 172419 AACTTGAACTTC 172430 >seq6 Length=59463898 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || || ||||| | ||| | |||||| | ||| | || | | |||||| ||||||||| Sbjct 7426928 CCACCCTGATCAACATAGCGGGCAGTGTCATTAAACACACGGAGCATTGGAACAATACCA 7426869 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||| ||||| ||| || | ||| ||| || ||| Sbjct 7426868 TTAGATGTCCCATTTGTTCCTCGAATGTAACTACCATGTGCACGTATGTTATGAACAGAA 7426809 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || ||||| |||| || | ||||||| || | ||||||||||| Sbjct 7426808 ACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTTCAAAGTATCATAAATC 7426749 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 7426748 CCCTCAATACTATCATCTTTCAT 7426726 >seq5 Length=48169137 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || || ||||| | ||| | |||||| | ||| | || | | |||||| ||||||||| Sbjct 35185793 CCACCCTGATCAACATAGCGGGCAGTGTCATTAAACACACGCAGCATTGGAACAATACCA 35185734 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || | ||||| ||||| ||| ||||| ||| || | ||| ||| ||| ||| Sbjct 35185733 TTAGACGTCCCATTTGTTCCACGAATGTAACTACCATGGGCACGTATGTTATGAATAGAA 35185674 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || ||||| |||| || | ||||||| || | ||||||||||| Sbjct 35185673 ACACCAATTCCTCCTGCAGATTTACTAATAATAGCACACTCCTTCAATGTATCATAAATC 35185614 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 35185613 CCCTCAATACTATCATCTTTCAT 35185591 >seq7 Length=48961560 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||||||||| || || || || |||||| || | ||||| || ||||| ||| Sbjct 5781756 CAAGCAAAATCACAGTGAAGACCTTCATCTCTAGAGATGAGCTCATTTGAGAATGTCAAA 5781697 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 || ||||||| |||||| ||||| | ||||||||| Sbjct 5781696 CCTGGCATCAATCCTCTCTTTTTAAGCCAGAATAT 5781662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562058723132280