Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq6 116 3e-21 seq4 111 1e-19 seq5 107 1e-18 >seq6 Length=59463898 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 |||||||| | || | |||||||| || ||| || ||||| ||||||||||||| | Sbjct 20997745 CCGCCCCTCAATCGAAGTACCAAATGAAGGGTGGATTCCTTTTGGATATTGTAATCAGCT 20997686 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| | || ||||| ||||||||||| || || || | ||| ||||| | || Sbjct 20997685 AGGGTGCGACCATCTTCCAATTGCTTACCGGCGAAGATAAGCCTCTGCTGATCAGGAGGG 20997626 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| ||||| ||||| ||| ||| | | | | || || | || ||| Sbjct 20997625 ATACCCTCTTTGTCCTGGATCTTGGCTTTGACATTATCAATCGTATCAGAAGATTCAACC 20997566 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||||| || || || |||||||| || |||||||| ||||| Sbjct 20997565 TCGAGGGTAATGGTCTTCCCTGTCAAAGTCTTAACAAAAATTTGCAT 20997519 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| |||||| || ||||||||||||| ||| | ||| | || || | |||| Sbjct 17146545 TGGAGAGTGGACTCTTTCTGGATATTGTAATCAGCCAGAGTCCGACCATCTTCAAGCTGC 17146486 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| || || || || | ||||| |||||||| || ||||| Sbjct 17146485 TTTCCAGCAAAAATCAATCTTTGCTGGTCTGGGGGAATACCCTCCTTATCCTGTATCTTG 17146426 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 |||||| | | | ||||| ||| ||||||| ||||| ||||| || || Sbjct 17146425 GCCTTTACATTGTCGATTGTGTCTGAGCTCTCAACCTCCAAAGTAATAGTTTTGCCTGTG 17146366 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || |||||||||||||| Sbjct 17146365 AGGGTCTTAACAAAAATCTGCAT 17146343 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||||||| | || || || ||| || ||||| ||||| |||| ||| | | Sbjct 17162346 AGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCTAGGGTCCTT 17162287 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||| ||||| || ||||| |||| | || ||||| | || | |||||| Sbjct 17162286 CCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTTTGCTGATCTGGTGGGATTCCCTCC 17162227 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| ||| |||||| | | | ||||| |||||||||| || Sbjct 17162226 TTGTCTTGAATTTTTGCCTTTACATTGTCAATTGTGTCTGAACTTTCCACCTCCAAAGTT 17162167 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||||||| |||||||| |||||||| Sbjct 17162166 ATGGTCTTTCCTGTCAAAGTCTTTACAAAGATCTGCAT 17162129 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || ||| ||||| |||||||||||||| | || | |||| Sbjct 17161662 AGTCGGAGCACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAATCTGCTAAAGTTCGG 17161603 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | ||| || || ||||| || || | |||||| || | |||| || |||| Sbjct 17161602 CCATCCTCAAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGAATGCTCTCC 17161543 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | || || || |||||||| | || Sbjct 17161542 TTGTCCTGAATCTTGGCCTTGACATTGTCAATAGTATCAGAGCTTTCCACCTCAAGGGTG 17161483 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| || | ||| || || || || ||||| Sbjct 17161482 ATCGTCTTTCCAGTGAGAGTCTTCACGAAGATTTGCAT 17161445 Score = 95.1 bits (104), Expect = 9e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || ||||| || | ||| | || |||| ||||||||||| ||||| || Sbjct 9515673 TCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAG 9515732 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || |||||||| || | |||| || |||||||| |||||| ||| ||| Sbjct 9515733 ATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTTTGCTTTGACATTG 9515792 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || | ||||||||| | || ||||| || ||||| | ||||| || Sbjct 9515793 TCGATTGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTACCCGTTAGGGTTTTCACG 9515852 Query 48756 AAAATCTGCATCGTG 48770 || ||||||||| || Sbjct 9515853 AAGATCTGCATCTTG 9515867 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 ||||| |||||||||||||| | | | | ||| | || ||||||||||| || ||||| Sbjct 20998621 TCTTTCTGAATATTGTAATCTGCCAAAGTACGACCATCCTCCAACTGCTTGCCAGCAAAA 20998562 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | || ||||| | ||||| |||||||| || ||||||| ||| ||| | Sbjct 20998561 ATAAGCCTTTGCTGATCTGGGGGAATACCCTCCTTATCCTGAATCTTTGCTTTCACATTA 20998502 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||| || | ||||| || || || || | || || ||| Sbjct 20998501 TCAATTGTGTCAGAGCTTTCCACTTCTAAGGTAATAGTCTTCCCAGTAAGTGTCTTCACA 20998442 Query 48756 AAAATCTGCAT 48766 || || ||||| Sbjct 20998441 AATATTTGCAT 20998431 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 |||| ||| ||||| || | || || || || ||||| ||||||| ||| | || Sbjct 20998420 AGCCTCAAAACCAAGTGCAAAGTAGATTCCTTCTGGATATTATAATCAGCCAGAGTACGT 20998361 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| |||||||| || || | ||| ||||| | |||| ||||| Sbjct 20998360 CCATCCTCCAACTGCTTGCCGGCAAAAATTAGCCTCTGCTGATCTGGAGGAATACCCTCT 20998301 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||| || || ||| | | | | || || || ||||||| || Sbjct 20998300 TTGTCCTGAATTTTCGCCTTCACATTATCTATTGTATCAGAACTTTCAACCTCCAAAGTT 20998241 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || | || || |||||||| ||||| Sbjct 20998240 ATTGTCTTTCCGGTAAGGGTCTTGACAAAAATTTGCAT 20998203 >seq4 Length=49191682 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || |||||||| ||||||| ||| | || | || || | || ||||| ||||| Sbjct 19846437 TCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAA 19846496 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || ||||||||||||| |||| |||||||| || |||||| ||| ||| | Sbjct 19846497 ATAAGACGCTGTTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTCGCTTTCACATTA 19846556 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||||| |||||||| || ||||| | || || ||| Sbjct 19846557 TCAATCGTATCAGAACTCTCCACCTCCAAAGTAATCGTCTTCCCCGTTAGCGTCTTCACA 19846616 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 19846617 AAAATCTGCAT 19846627 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || |||||||||||||||| || | | | || ||||||||| Sbjct 14092656 TGAAGGGTGGACTCCTTCTGAATATTGTAATCAGCAAGGGTCCTTCCATCCTCCAACTGC 14092715 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || || ||||| |||| | ||| || |||| || | || || || || ||| ||| Sbjct 14092716 TTCCCTGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCTTCTTTATCCTGAATTTTT 14092775 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | || || ||||||||| | ||||| || || || ||| Sbjct 14092776 GCCTTCACATTATCAATGGTATCAGAGCTCTCCACCTCAAGGGTAATTGTCTTCCCAGTC 14092835 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 || || || |||||||||||||| Sbjct 14092836 AAGGTCTTCACAAAAATCTGCAT 14092858 >seq5 Length=48169137 Score = 107 bits (118), Expect = 1e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || ||||| || ||||||| ||| ||| | || || | ||||||||| |||||| Sbjct 36920928 TCCTTCTGAATGTTATAATCAGCAAGAGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAT 36920869 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 |||| ||||||||||||| |||| ||||| || || |||||| ||| || | Sbjct 36920868 ATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCCTGAATCTTCGCTTTCACGTTA 36920809 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | || || || ||| ||||||| || || |||||||| || | ||||| || Sbjct 36920808 TCAATAGTATCAGAACTCTCAACCTCCAAGGTGATGGTTTTTCCGGTTAGGGTTTTGACG 36920749 Query 48756 AAAATCTGCATC 48767 |||||||||||| Sbjct 36920748 AAAATCTGCATC 36920737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380904511641021