Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq55 192 9e-44 seq104 116 5e-21 seq6 107 3e-18 seq5 104 3e-17 seq4 93.3 6e-14 >seq55 Length=606834 Score = 192 bits (212), Expect = 9e-44 Identities = 377/558 (68%), Gaps = 3/558 (1%) Strand=Plus/Minus Query 18147 AATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTAC 18206 |||| | ||||| ||||||||| || | ||||| || | || || | ||||| Sbjct 250263 AATAAAGCAAACAAGCAAAATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTG 250204 Query 18207 TAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTAC 18266 ||| ||||| || ||||||| ||| | |||||| |||||||| || | |||||||| Sbjct 250203 AAAAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTAC 250144 Query 18267 TAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATT 18326 ||| || || ||||| |||||||| || || || | | |||||||||||| | || Sbjct 250143 CAGAGAAAAAAATACCTTCAACGCAAGCAAAAGCAACGATTCTTTCAGCAAAC--GAATC 250086 Query 18327 TATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCT 18386 | | |||||||| ||||| || ||| ||||| || || ||| Sbjct 250085 CGACGAATCG-ATCCATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCT 250027 Query 18387 CTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446 | ||||||| ||||||| || || || ||||| ||||||| || || | | | Sbjct 250026 CAATAGCATGAAACAAACGATTCTTCTCAACCGAATCGCTTATATACGTTTCAAGAAGGA 249967 Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506 | |||||||||||||||||| | || || || || ||||||| ||||| | | | Sbjct 249966 GACTATACATTTCAGAATGTATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCG 249907 Query 18507 CCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGT 18566 |||| | | ||||| || | |||||| | | | |||||| ||| || |||| Sbjct 249906 CCTCTGAAACTTGAACTTCTTTCATGAATCTTCCAGCAAGATTCTCTAAAACGATGCCGT 249847 Query 18567 CAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGAT 18626 | | | ||||||||||| | ||| | | || ||| ||| || | | || Sbjct 249846 CGGATGCGGCGAAAAATGCAAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAAT 249787 Query 18627 TGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATT 18686 ||||||| | | | ||||| ||||| |||||||||||| | ||||| || || | || Sbjct 249786 TGTTCCAATGTTGAAGATCTTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTT 249727 Query 18687 CGGCCTGTTTGTACATTT 18704 |||| | ||||||||||| Sbjct 249726 CGGCTTTTTTGTACATTT 249709 Score = 192 bits (212), Expect = 9e-44 Identities = 377/558 (68%), Gaps = 3/558 (1%) Strand=Plus/Minus Query 18147 AATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTAC 18206 |||| | ||||| ||||||||| || | ||||| || | || || | ||||| Sbjct 258946 AATAAAGCAAACAAGCAAAATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTG 258887 Query 18207 TAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTAC 18266 ||| ||||| || ||||||| ||| | |||||| |||||||| || | |||||||| Sbjct 258886 AAAAAGTTAAACCAGGCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTAC 258827 Query 18267 TAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATT 18326 ||| || || ||||| |||||||| || || || | | |||||||||||| | || Sbjct 258826 CAGAGAAAAAAATACCTTCAACGCAAGCAAAAGCAACGATTCTTTCAGCAAAC--GAATC 258769 Query 18327 TATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCT 18386 | | |||||||| ||||| || ||| ||||| || || ||| Sbjct 258768 CGACGAATCG-ATCCATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCT 258710 Query 18387 CTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACA 18446 | ||||||| ||||||| || || || ||||| ||||||| || || | | | Sbjct 258709 CAATAGCATGAAACAAACGATTCTTCTCAACCGAATCGCTTATATACGTTTCAAGAAGGA 258650 Query 18447 AAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAG 18506 | |||||||||||||||||| | || || || || ||||||| ||||| | | | Sbjct 258649 GACTATACATTTCAGAATGTATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCG 258590 Query 18507 CCTCGGGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGT 18566 |||| | | ||||| || | |||||| | | | |||||| ||| || |||| Sbjct 258589 CCTCTGAAACTTGAACTTCTTTCATGAATCTTCCAGCAAGATTCTCTAAAACGATGCCGT 258530 Query 18567 CAGCAGATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGAT 18626 | | | ||||||||||| | ||| | | || ||| ||| || | | || Sbjct 258529 CGGATGCGGCGAAAAATGCAAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAAT 258470 Query 18627 TGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATT 18686 ||||||| | | | ||||| ||||| |||||||||||| | ||||| || || | || Sbjct 258469 TGTTCCAATGTTGAAGATCTTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTT 258410 Query 18687 CGGCCTGTTTGTACATTT 18704 |||| | ||||||||||| Sbjct 258409 CGGCTTTTTTGTACATTT 258392 >seq104 Length=244920 Score = 116 bits (128), Expect = 5e-21 Identities = 237/354 (67%), Gaps = 8/354 (2%) Strand=Plus/Plus Query 18147 AATATAATAAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTAC 18206 |||| | ||||| || |||||| || | ||||| || | | || | ||||| Sbjct 172056 AATAAAGAAAACAAGCGAAATCACAATGAAGTCCTTCGTCACACAAAATAAGCTCGTTTG 172115 Query 18207 TAAACGTTAACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTAC 18266 ||| ||||| || |||||| ||| | |||||| ||||||||||||| ||||||| Sbjct 172116 AAAAAGTTAAACCATGCATTAAACCACGTTTTTTAAGCCAAAATATCGCACATAAACTAC 172175 Query 18267 TAGAAAAGAATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAA--AACTGTA 18324 |||| || || ||||| |||||||| || || || | | ||||||| ||| || | | Sbjct 172176 TAGAGAAAAAAATACCTTCAACGCAAGCAAAAGCAACGATTCTTTCAACAATCAAATCGA 172235 Query 18325 TTTATTGCTCAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACT 18384 || | |||||||| ||||| || ||| ||||| || || | Sbjct 172236 CGAATCG------ATCCATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGT 172289 Query 18385 CTCTATAGCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAA 18444 ||| ||||||| ||||||| || || || |||| ||||||| || || | | Sbjct 172290 CTCAATAGCATGAAACAAACAATTCTTCTCAACCAAATCGCTTATATATGTTTCAAGAAG 172349 Query 18445 CAAAGAATACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAA 18498 | | |||||||||||||||||| | || || || || || || || || || Sbjct 172350 GAGACTATACATTTCAGAATGTATATTCTCAATCGCGATTTGGAACCTGTAGAA 172403 >seq6 Length=59463898 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | ||||||||||| || ||||| || || | || || || ||| Sbjct 20997063 ATGCAAATCTTCGTGAAAACATTGACCGGCAAAACCATCACCCTTGAGGTGGAGAGTTCC 20997122 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || ||||||||| ||| || ||||| || ||||| || || ||||| ||| Sbjct 20997123 GATACCATAGACAACGTGAAAGCTAAGATCCAAGACAAGGAAGGGATCCCACCAGATCAA 20997182 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | |||||||| || | |||||| | | || | | ||||| || Sbjct 20997183 CAAAGACTTATCTTCGCCGGTAAACAATTAGAAGATGGCCGTACCCTTGCTGATTACAAC 20997242 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | || |||||||||||| | | || ||||| || Sbjct 20997243 ATCCAAAAAGAATCCACCCTTCATTTAGTGCTTCGGTTGAGAGGTGG 20997289 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || ||| | ||||| || |||||||| |||||||| ||| ||| Sbjct 20998431 ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTAGAAGTGGAAAGCTCT 20998490 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || |||||| || || || ||||| || || || || ||||| || Sbjct 20998491 GACACAATTGATAATGTGAAAGCAAAGATTCAGGATAAGGAGGGTATTCCCCCAGATCAG 20998550 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||| | |||| ||| || |||||| | || ||| | ||||| ||||||| ||| Sbjct 20998551 CAAAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACAAT 20998610 Query 156003 AT 156004 || Sbjct 20998611 AT 20998612 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || ||||| || || || ||||| | || || ||| |||| Sbjct 20997519 ATGCAAATTTTTGTTAAGACTTTGACAGGGAAGACCATTACCCTCGAGGTTGAATCTTCT 20997578 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || || || ||||| || || ||||| || || Sbjct 20997579 GATACGATTGATAATGTCAAAGCCAAGATCCAGGACAAAGAGGGTATCCCTCCTGATCAG 20997638 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||||||||||| | |||||| | || || | ||||| | Sbjct 20997639 CAGAGGCTTATCTTCGCCGGTAAGCAATTGGAAGATGGTCGCACCCTAGCTGATTACA-- 20997696 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||||||||| || | || |||||||| || | |||| || ||||| Sbjct 20997697 ATATCCAAAAGGAATCCACCCTTCATTTGGTACTTCGATTGAGGGGCGG 20997745 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||||||| | || || | || ||||| || || || | || || || ||| Sbjct 17145887 ATGCAAATATTTGTGAAGACTCTCACCGGAAAGACCATCACTCTTGAGGTGGAGAGCTCT 17145946 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || || ||| || || || ||||| ||||| || ||||| ||| Sbjct 17145947 GATACCATCGACAATGTAAAGGCTAAGATTCAGGACAAAGAGGGCATTCCACCAGACCAA 17146006 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || || ||||| |||||| | ||||||| ||||||| || Sbjct 17146007 CAGAGGCTCATCTTTGCTGGCAAACAGCTTGAAGATGGCCGAACTTTGGCAGATTACAAC 17146066 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || |||||| | || || ||||| ||| Sbjct 17146067 ATTCAGAAAGAGTCCACCCTCCATTTGGTG 17146096 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| |||| || | || || ||||||||||| || || || || || Sbjct 17146343 ATGCAGATTTTTGTTAAGACCCTCACAGGCAAAACTATTACTTTGGAGGTTGAGAGCTCA 17146402 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || || || || ||||| ||||| || || || || ||||| || Sbjct 17146403 GACACAATCGACAATGTAAAGGCCAAGATACAGGATAAGGAGGGTATTCCCCCAGACCAG 17146462 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||| || |||||||| |||||| | ||| | | ||||| ||| Sbjct 17146463 CAAAGATTGATTTTTGCTGGAAAGCAGCTTGAAGATGGTCGGACTCTGGCTGATTACAAT 17146522 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 17146523 ATCCAGAAAGAGTCCACTCTCCA 17146545 Score = 86.0 bits (94), Expect = 9e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || ||||| || || || || || || ||| |||| Sbjct 20998203 ATGCAAATTTTTGTCAAGACCCTTACCGGAAAGACAATAACTTTGGAGGTTGAAAGTTCT 20998262 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || ||||| ||||| || || ||||| || || |||||||| || Sbjct 20998263 GATACAATAGATAATGTGAAGGCGAAAATTCAGGACAAAGAGGGTATTCCTCCAGATCAG 20998322 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | |||| |||||| |||||| | || ||| | ||| | | ||||||||| Sbjct 20998323 CAGAGGCTAATTTTTGCCGGCAAGCAGTTGGAGGATGGACGTACTCTGGCTGATTATAAT 20998382 Query 156003 AT 156004 || Sbjct 20998383 AT 20998384 >seq5 Length=48169137 Score = 104 bits (114), Expect = 3e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || |||||||| || || || || || || |||| Sbjct 36920738 ATGCAGATTTTCGTCAAAACCCTAACCGGAAAAACCATCACCTTGGAGGTTGAGAGTTCT 36920797 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||||||| || || || |||||||| || || || || || ||| Sbjct 36920798 GATACTATTGATAACGTGAAAGCGAAGATTCAGGATAAAGAGGGAATTCCACCGGATCAA 36920857 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| ||||||||||| || ||| |||||| | | |||||||| Sbjct 36920858 CAGCGTTTGATATTTGCTGGTAAGCAGCTTGAGGATGGAAGAACTCTTGCTGATTATAAC 36920917 Query 156003 AT 156004 || Sbjct 36920918 AT 36920919 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/212 (69%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || || ||||| ||||| |||| || || ||| Sbjct 36920510 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATTACCCTAGAGGTAGAGAGTTCC 36920569 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || |||||||| ||||| ||||| || || || || |||||||| || Sbjct 36920570 GATACAATCGACAACGTGAAGGCAAAAATTCAAGACAAGGAGGGTATTCCTCCAGACCAG 36920629 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| ||||||| | ||||| || || | ||||| || || | | ||||| ||| Sbjct 36920630 CAACGATTGATCTTCGCCGGAAAACAATTAGAAGACGGAAGGACACTGGCGGATTACAAT 36920689 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 || ||||| || | ||||||||||| ||| Sbjct 36920690 AT--CCAAAAGGAATCAACGCTTCATTTGGTG 36920719 >seq4 Length=49191682 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || || | ||||| | || || ||||| || || ||||||| ||| || Sbjct 19846855 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACCATAACGCTAGAAGTAGAATCCTCC 19846796 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| ||||| ||||| |||||||| || || || || || Sbjct 19846795 GACACAATCGACAACGTGAAAGCCAAAATCCAAGACAAAGAAGGAATTCCACCGGATCAG 19846736 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||||| || ||| | ||||| ||||| | ||||||||||| Sbjct 19846735 CAGCGGTTGATCTTCGCCGGAAAACAGTTAGAAGACGGGAGAACACTTGCAGATTATAAT 19846676 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || |||||| | ||||||||| Sbjct 19846675 ATTCAGAAAGAGTCTACGCTTCAT 19846652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731806799353200