Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq6 116 2e-21 seq4 111 1e-19 seq5 98.7 7e-16 seq2 93.3 3e-14 >seq6 Length=59463898 Score = 116 bits (128), Expect = 2e-21 Identities = 148/200 (74%), Gaps = 3/200 (2%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| ||| ||||| |||| ||||| || |||||||| || Sbjct 9515673 TCCTTCTGGATGTTGTAGTCGGCGAGAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAG 9515732 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 || | |||||| || ||| | || | ||||| ||||| || || || || |||| Sbjct 9515733 ATGAGACGCTGTTGGTCTGGTGGAATTCCTTCCTTGTCTTGGATCTT-TGCTTTGACATT 9515791 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | |||||| || ||||| || | |||||||| ||||| |||| ||||| || Sbjct 9515792 GTCGATTGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTACCCGTTAGGGTTTTCAC 9515851 Query 33738 AAAGATCTGCATAGTTGGTG 33757 ||||||||||| |||||| Sbjct 9515852 GAAGATCTGCAT-CTTGGTG 9515870 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| || | ||| ||||| || ||| |||||||| ||||||||||| | Sbjct 20997289 CCACCTCTCAACCGAAGCACTAAATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGCA 20997230 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || |||||||| ||||| || || | | || |||||| | || Sbjct 20997229 AGGGTACGGCCATCTTCTAATTGTTTACCGGCGAAGATAAGTCTTTGTTGATCTGGTGGG 20997170 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || |||| || | ||| | ||| ||| ||||| Sbjct 20997169 ATCCCTTCCTTGTCTTGGATCTTAGCTTTC-ACGTTGTCTATGGTATCGGAACTCTCCAC 20997111 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || || ||||| || ||||| ||||| Sbjct 20997110 CTCAAGGGTGATGGTTTTGCCGGTCAATGTTTTCACGAAGATTTGCAT 20997063 Score = 102 bits (112), Expect = 5e-17 Identities = 164/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| ||||| | || ||||| ||| || || |||||||| || | Sbjct 17162355 CCACCACGAAGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCT 17162296 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || |||||||| || || ||||| ||||| | ||||||||| | || Sbjct 17162295 AGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTTTGCTGATCTGGTGGG 17162236 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGA---TTC 33698 | || || ||||| |||||| || | |||| |||| ||||| ||| ||| Sbjct 17162235 ATTCCCTCCTTGTCTTGAATTTT-TGCCTTTACATTGTCAATTGTGTC---TGAACTTTC 17162180 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || | || || || || ||||| || || |||||||||||||||||| Sbjct 17162179 CACCTCCAAAGTTATGGTCTTTCCTGTCAAAGTCTTTACAAAGATCTGCATA 17162128 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| || || | ||| ||||| ||| ||||| ||||||||||||| Sbjct 17146342 ACCACCACGGAGACGCAAAACAAGATGGAGAGTTGACTCCTTTTGAATGTTGTAATCGGC 17146283 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || ||| | || || | || ||||| ||||||||||| | ||||| ||| | || Sbjct 17146282 CAAGGTTCGTCCATCTTCAAGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGTGG 17146223 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || |||||||| || || || | |||| ||| | |||||| || | Sbjct 17146222 AATGCCCTCTTTGTCTTGTATCTT-TGCCTTGACATTGTCTATGGTGTCAGAACTCTCTA 17146164 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || ||||| | || || |||||||| |||||| Sbjct 17146163 CCTCAAGTGTGATGGTCTTTCCTGTGAGGGTCTTGACAAAGATTTGCATA 17146114 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| || | ||||||||| || || |||||| || ||||||||||| | Sbjct 20997517 CCACCTCTCAATCGAAGCACCAAATGAAGGGTAGACTCTTTCTGGATGTTGTAATCAGCT 20997458 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | || || | |||||| || ||||| || | | ||||||||| | || Sbjct 20997457 AGGGTTCTACCATCCTCAAGTTGTTTCCCTGCAAAGATAAGCCTCTGCTGATCAGGAGGG 20997398 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| |||||||| || || | | |||| || | || || ||||| || Sbjct 20997397 ATACCCTCTTTGTCCTGGATCTT-GGCCTTGACATTATCAATCGTATCAGACGATTCAAC 20997339 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || || || || || || || |||||||| Sbjct 20997338 CTCAAGGGTGATGGTTTTTCCGGTCAAGGTCTTAACGAATATCTGCAT 20997291 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||||||| || | |||||||| || ||| || || |||||||||||||||| Sbjct 20997973 CCACCTCTCAATCGAAGTACCAAATGAAGGGTGGATTCCTTCTGTATGTTGTAATCGGCT 20997914 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || || | || || || |||||||| | | ||||||||| | || Sbjct 20997913 AGGGTTCTTCCATCCTCAAGCTGCTTCCCTGCAAAAATAAGCCTCTGCTGATCAGGAGGG 20997854 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || || || ||| || | || |||| || | || || |||||| || Sbjct 20997853 ATACCCTCCTTATCCTGAATCTT-GGCTTTGACATTATCAATTGTATCCGATGATTCAAC 20997795 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || ||||| || || || ||||| || ||||| Sbjct 20997794 CTCCAGGGTGATGGTCTTTCCTGTCAAAGTCTTGACAAAAATTTGCAT 20997747 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | ||||||||| || || ||||||||| ||||||||||| | Sbjct 17161443 CCACCACGGAGACGGAGCACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCA 17161384 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| || || || |||||||| | ||||||||| ||| | || Sbjct 17161383 AGGGTACGCCCATCCTCCAGCTGCTTGCCTGCAAAAATGAGACGCTGCTGGTCTGGTGGG 17161324 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||||| ||||| ||| || | | ||||| ||| | ||| || ||| || Sbjct 17161323 ATGCCTTCCTTGTCTTGAATCTT-GGCCTTAACATTGTCTATGGTATC---TGAACTCTC 17161268 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| ||||| || || | || || ||||| || ||||| Sbjct 17161267 AACTTCGAGAGTGATGGTTTTGCCAGTGAGGGTCTTCACAAATATTTGCAT 17161217 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| || || | || ||||| ||| || || ||||| || || | Sbjct 17147025 CCACCACGAAGACGCAATACAAGGTGGAGAGTAGACTCCTTCTGAATGTTATAGTCAGCA 17146966 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || | | | || |||||||| || || ||||| ||||| | |||||||||| | || Sbjct 17146965 AGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 17146906 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTC 33698 | ||||| ||||| ||||| || || |||| || | ||||| ||| ||| Sbjct 17146905 ATTCCTTCCTTGTCCTGTATTTT-TGCTTTGACATTATCGATTGTGTC---TGAACTTTC 17146850 Query 33699 CACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || || | || || || || ||||| || || || ||||||||||||||| Sbjct 17146849 TACCTCCAAAGTAATGGTCTTTCCTGTCAAAGTCTTCACAAAGATCTGCATA 17146798 >seq4 Length=49191682 Score = 111 bits (122), Expect = 1e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 |||||| || || || ||||| | ||||| | |||| || || ||||||||||| || Sbjct 19846664 CTCTTTCTGAATATTATAATCTGCAAGTGTTCTCCCGTCTTCTAACTGTTTTCCGGCGAA 19846723 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| ||||||||||| | || | ||||||||||| ||||| |||| || | Sbjct 19846724 GATCAACCGCTGCTGATCCGGTGGAATTCCTTCTTTGTCTTGGATTTTGGCTTTC-ACGT 19846782 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||| ||||| || || | ||| || ||||| || |||| ||||| | Sbjct 19846783 TGTCGATTGTGTCGGAGGATTCTACTTCTAGCGTTATGGTTTTGCCGGTTAGGGTTTTGA 19846842 Query 33737 CAAAGATCTGCAT 33749 | ||||||||||| Sbjct 19846843 CGAAGATCTGCAT 19846855 >seq5 Length=48169137 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||||||| || || || ||||| || |||||||| | ||||| | | |||| || Sbjct 36920719 CACCAAATGAAGCGTTGATTCCTTTTGGATATTGTAATCCGCCAGTGTCCTTCCGTCTTC 36920660 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 |||||||||||||| || ||||| || ||||| ||| | || | ||| || ||||| Sbjct 36920659 TAATTGTTTTCCGGCGAAGATCAATCGTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTG 36920600 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 |||||| || | || | ||| | || ||| || || || | || || |||| Sbjct 36920599 AATTTT-TGCCTTCACGTTGTCGATTGTATCGGAACTCTCTACCTCTAGGGTAATGGTTT 36920541 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||||||||| Sbjct 36920540 TGCCGGTTAGGGTTTTCACGAAGATCTGCAT 36920510 >seq2 Length=36634854 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | | ||| | || | || ||||| || || || |||||||| |||| Sbjct 8273585 CACCACCACGGAGACGGAGAACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGG 8273526 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 ||| ||||| |||| || | |||||||||||| || || | || || || || | | Sbjct 8273525 CGAGAGTGCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGTCGTTGTTGGTCCGGTG 8273466 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| ||||| | || || | ||| | ||||| ||||| Sbjct 8273465 GAATCCCTTCCTTGTCTTGGATTTT-GGCTTTGACGTTGTCGATTGTGTCAGAGGATTCA 8273407 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| |||||||| |||| ||||| || ||||||||||| Sbjct 8273406 ACCTCGAGGGTGATTGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 8273357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328675448667840