Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq55 221 2e-52 seq104 147 3e-30 seq5 145 1e-29 seq6 136 5e-27 >seq55 Length=606834 Score = 221 bits (244), Expect = 2e-52 Identities = 589/897 (66%), Gaps = 6/897 (1%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || ||||| |||||||| ||||| ||||| ||||| || |||| | || || Sbjct 250544 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTCTTCCCTTGAAGAGAAATCAA 250485 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 ||||| ||||||| ||||| ||||||| ||| | | || | || | Sbjct 250484 CTCCATCCAATCAAAAGGATTCTGAACATTATAAACTTTCCCACAACCAAGCTCACCCAA 250425 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||| ||||| ||||| || || || || |||||| |||| |||||| || | | Sbjct 250424 CAACCTATCGGCAACGAACTCAATATACTGGCTCATCAAATCACCATTCATCCCGACCAA 250365 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || || | |||||| | || || || || || || | | || Sbjct 250364 CGCGCACGGAAGCGCGTCACAAACAAACTCCCTCTCAATCTCAACCGCATCACTCACAAT 250305 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 | | ||| ||| |||||| || || | || || | | | || || || || Sbjct 250304 CTTCTTCACTCGCTCCTCACTCAGTTTATTCCTCAATAGTGAATAAAGCAAACAAGCAAA 250245 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 |||||||| || || || || | ||| | ||||| ||||| || | |||||||| Sbjct 250244 ATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 250185 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744 || |||||| ||||| |||||||| || ||| ||| ||||| || || || ||||| Sbjct 250184 TAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTACCAGAGAAAAAAATACCTTC 250125 Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCCACTT 39801 || ||||| ||||| | ||| || | ||| | ||| || ||||| || Sbjct 250124 AACGCAAGCAAAAGCAACGATTCTTTCAGCA-AAC--GAATCCGACGAATCGATCCATTT 250068 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | |||||||| |||||||| | |||||| || || || ||||||| ||| | | Sbjct 250067 CAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGCATGAAACAAACG 250008 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 || || ||| | ||| | | ||| || || | | |||||||||||||| ||||| Sbjct 250007 ATTCTTCTCAACCGAATCGCTTATATACGTTTCAAGAAGGAGACTATACATTTCAGAATG 249948 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 || || |||||||| || ||||| ||||||||| | || || | || ||| || || Sbjct 249947 TATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCGCCTCTGAAACTTGAACTTC 249888 Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 | |||||| | || | ||| || || || || || ||||| |||||||| Sbjct 249887 TTTCATGAATCTTCCAGCAAGATTCTCTAAAACGATGCCGTCGGATGCGGCGAAAAATGC 249828 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 | || || | ||| | | ||| || || || || ||||| | | | ||| Sbjct 249827 AAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAATTGTTCCAATGTTGAAGATC 249768 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161 || ||||| ||| |||||||| || ||||| || || || || || ||||||||||| | Sbjct 249767 TTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACATTTC 249708 Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAG 40218 ||| || | | | |||| ||||| || ||| ||| | | ||| ||| ||||| Sbjct 249707 CCAAATTTTAGGGTATTCAATTGGGAACATACAAAAACGGTCTGGGTTTGGAGCAAG 249651 Score = 221 bits (244), Expect = 2e-52 Identities = 589/897 (66%), Gaps = 6/897 (1%) Strand=Plus/Minus Query 39325 TTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384 ||| || ||||| |||||||| ||||| ||||| ||||| || |||| | || || Sbjct 259227 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTCTTCCCTTGAAGAGAAATCAA 259168 Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444 ||||| ||||||| ||||| ||||||| ||| | | || | || | Sbjct 259167 CTCCATCCAATCAAAAGGATTCTGAACATTATAAACTTTCCCACAACCAAGCTCACCCAA 259108 Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504 ||| ||||| ||||| || || || || |||||| |||| |||||| || | | Sbjct 259107 CAACCTATCGGCAACGAACTCAATATACTGGCTCATCAAATCACCATTCATCCCGACCAA 259048 Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564 || || || || | |||||| | || || || || || || | | || Sbjct 259047 CGCGCACGGAAGCGCGTCACAAACAAACTCCCTCTCAATCTCAACCGCATCACTCACAAT 258988 Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624 | | ||| ||| |||||| || || | || || | | | || || || || Sbjct 258987 CTTCTTCACTCGCTCCTCACTCAGTTTATTCCTCAATAGTGAATAAAGCAAACAAGCAAA 258928 Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684 |||||||| || || || || | ||| | ||||| ||||| || | |||||||| Sbjct 258927 ATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 258868 Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744 || |||||| ||||| |||||||| || ||| ||| ||||| || || || ||||| Sbjct 258867 TAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTACCAGAGAAAAAAATACCTTC 258808 Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCCACTT 39801 || ||||| ||||| | ||| || | ||| | ||| || ||||| || Sbjct 258807 AACGCAAGCAAAAGCAACGATTCTTTCAGCA-AAC--GAATCCGACGAATCGATCCATTT 258751 Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | |||||||| |||||||| | |||||| || || || ||||||| ||| | | Sbjct 258750 CAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGCATGAAACAAACG 258691 Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921 || || ||| | ||| | | ||| || || | | |||||||||||||| ||||| Sbjct 258690 ATTCTTCTCAACCGAATCGCTTATATACGTTTCAAGAAGGAGACTATACATTTCAGAATG 258631 Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981 || || |||||||| || ||||| ||||||||| | || || | || ||| || || Sbjct 258630 TATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCGCCTCTGAAACTTGAACTTC 258571 Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041 | |||||| | || | ||| || || || || || ||||| |||||||| Sbjct 258570 TTTCATGAATCTTCCAGCAAGATTCTCTAAAACGATGCCGTCGGATGCGGCGAAAAATGC 258511 Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101 | || || | ||| | | ||| || || || || ||||| | | | ||| Sbjct 258510 AAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAATTGTTCCAATGTTGAAGATC 258451 Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161 || ||||| ||| |||||||| || ||||| || || || || || ||||||||||| | Sbjct 258450 TTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACATTTC 258391 Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAG 40218 ||| || | | | |||| ||||| || ||| ||| | | ||| ||| ||||| Sbjct 258390 CCAAATTTTAGGGTATTCAATTGGGAACATACAAAAACGGTCTGGGTTTGGAGCAAG 258334 >seq104 Length=244920 Score = 147 bits (162), Expect = 3e-30 Identities = 258/371 (70%), Gaps = 5/371 (1%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAAT-TCGTTAGAAAATGT 39672 || || ||||| |||||||| || || || || | || || ||| ||||| ||||| || Sbjct 172064 AAACAAGCGAAATCACAATGAAGTCCTTCGTCAC-ACAAAATAAGCTCGTTTGAAAAAGT 172122 Query 39673 GAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAA 39732 | ||| |||||| |||||| ||||| ||||||||||| ||| ||| | ||| || Sbjct 172123 TAAACCATGCATTAAACCACGTTTTTTAAGCCAAAATATCGCACATAAACTACTAGAGAA 172182 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCG-TAACTTGTATCATTAT 39791 || || ||||| || ||||| ||||| | ||| || | | | | | | || Sbjct 172183 AAAAATACCTTCAACGCAAGCAAAAGCAACGATTCTTTCAACAATCAAATCGACGA--AT 172240 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| ||| |||||||| |||||||| | |||||| || || || ||||||| Sbjct 172241 CGATCCATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGCAT 172300 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 ||| | | ||| || ||| | ||| | | |||||| || | | |||||||||| Sbjct 172301 GAAACAAACAATTCTTCTCAACCAAATCGCTTATATATGTTTCAAGAAGGAGACTATACA 172360 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971 |||| ||||| || || |||||||| || || || | ||| ||| | ||||| | || Sbjct 172361 TTTCAGAATGTATATTCTCAATCGCGATTTGGAACCTGTAGAAAGCACGCGCTTCTGAAA 172420 Query 39972 TTTGTACCTCT 39982 ||| || ||| Sbjct 172421 CTTGAACTTCT 172431 >seq5 Length=48169137 Score = 145 bits (160), Expect = 1e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | |||||||| |||| | || | |||||| |||| |||||| Sbjct 35185794 TCCACCCTGATCAACATAGCGGGCAGTGTCATTAAACACACGCAGCATTGGAACAATACC 35185735 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | |||||||||||| ||| ||||| || || || || ||| |||||| Sbjct 35185734 ATTAGACGTCCCATTTGTTCCACGAATGTAACTACCATGGGCACGTATGTTATGAATAGA 35185675 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||||||||| |||| || | |||||| |||||||| ||||| || Sbjct 35185674 AACACCAATTCCTCCTGCAGATTTACTAATAATAGCACACTCCTTCAATGTATCATAAAT 35185615 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| || ||||||||| ||||| Sbjct 35185614 CCCCTCAATACTATCATCTTTCATG 35185590 Score = 113 bits (124), Expect = 6e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || || || ||||||||||||||| ||| ||| | | | Sbjct 35185462 GTCCCAGCATTGAAAAGAGTTGGCGAAGCGTGAGTGAACCATCTTTGAGACATTAAGTGA 35185403 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| || ||| ||||||||||| || ||||||||| | | || | ||||||| Sbjct 35185402 TAAGTTTTAACAGCAGATTCTATATCATCCTTATGAATTCCAACAGAAACCCTCATCAAC 35185343 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||||||||| | ||| || ||| | | ||||||||| || ||| | || || Sbjct 35185342 ATATGCTGAGGCCTTTCCACAACTTTTCCTTGAACTTTCAACAGATAAGATCTCTCTAGG 35185283 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||| || || || ||||| || Sbjct 35185282 GTTTTGAATCCAAAGTAATCATAGTCAAAATCCCTATCATAAATTAT 35185236 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 68733 TAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCCCAG 68792 || |||||||||| |||| ||||| ||||||||||| | |||||||||| || || Sbjct 35187780 TAGCACTCTACGATTGTAGATATTTGAAGTATATGGTTCAAAGCATTCATTATTGCCAAG 35187721 Query 68793 AATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCATG 68852 |||||| || ||||||||||||||||| || || | | ||| || | ||| || Sbjct 35187720 AATTTGGCTGGTAGATGCAGTTGGCATAGGGGCAACAAGAAGTGAATTCCTTACACC-TG 35187662 Query 68853 TGTTATGATTTTATCTTT--TAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATTC 68910 | || |||| | |||| | || | ||||||||| | | || ||| ||||||| Sbjct 35187661 TCTT-TGATATCATCTCTCGGAGCATATCCCAATCCCACATACTGGAGGGTGTAACATTC 35187603 Query 68911 CAAAGATCGTATTGTAGAATTCC 68933 || | || || |||||||| Sbjct 35187602 CACATGTCAGGCTGAAGAATTCC 35187580 >seq6 Length=59463898 Score = 136 bits (150), Expect = 5e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| |||||||| | || | |||||||| |||| | || | ||||| |||| |||||| Sbjct 7426929 TCCACCCTGATCAACATAGCGGGCAGTGTCATTAAACACACGGAGCATTGGAACAATACC 7426870 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | ||||||||||| ||| ||||| || ||| || || ||| || ||| Sbjct 7426869 ATTAGATGTCCCATTTGTTCCTCGAATGTAACTACCATGTGCACGTATGTTATGAACAGA 7426810 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 | ||| ||||||||||| |||| || | |||||| ||||| || ||||| || Sbjct 7426809 AACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTTCAAAGTATCATAAAT 7426750 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 ||||| || ||||||||| ||||| Sbjct 7426749 CCCCTCAATACTATCATCTTTCATG 7426725 Score = 107 bits (118), Expect = 3e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || ||||| || | || ||||| || ||||||||||| | | ||| | | | Sbjct 7426602 GTCCCAGCATTGAAAAGAGTTGGAGAAGCATGAGTGAACCACCTCTGAGACATTAAGTGA 7426543 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| || ||| ||||||||||| || ||||||||| | | || | ||||||| Sbjct 7426542 TAAGTTTTAACAGCAGATTCTATATCATCCTTATGAATTCCAACAGAAACCCTCATCAAC 7426483 Query 70111 ATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCAGA 70170 ||||||||||| | |||||| ||| | | ||||||||| || ||| | || || Sbjct 7426482 ATATGCTGAGGCCTTTCTACAACTTTTCCTTCAACTTTCAACAGATAAGATCTCTCGAGG 7426423 Query 70171 GTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 ||||| || ||||| || | || ||| || || || ||||| || Sbjct 7426422 GTTTTGAATCCAAAGTAATCATAATCAAAATCCCTATCATAAATTAT 7426376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686847605012280