Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 100 4e-16 seq3 98.7 1e-15 seq6 95.1 2e-14 seq4 95.1 2e-14 seq1 93.3 5e-14 >seq5 Length=48169137 Score = 100 bits (110), Expect = 4e-16 Identities = 144/200 (72%), Gaps = 10/200 (5%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| |||||||| ||||| ||||| | Sbjct 31480451 AAATCCATCCATCTCCGTCAACAACTGATTAATAGTTTGTTCCCTCTCGTCATTCCC--- 31480507 Query 11599 CATACCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAAT 11655 |||| ||||| | | || | || || |||||||| ||||||||||| ||||| Sbjct 31480508 ACCACCAAGTCCAGCTCCTCTCTGTCTCCCAACAGCATCAATTTCATCAATGAAAACAAT 31480567 Query 11656 ACATGGTTGATTTTCGCGGGCGATT--TCAAAGAGATCGCGAACCCTTTTGGCACCCACA 11713 ||| || ||||| || || ||||| | ||| | |||||| ||||| ||| Sbjct 31480568 ACAAGG--CGCTTTCGACTTCGCTTTCTCAAACAAATCCCTAACCCTAGAAGCACCAACA 31480625 Query 11714 CCAACAAACATCTCCACAAA 11733 |||||||||| |||||||| Sbjct 31480626 CCAACAAACAGTTCCACAAA 31480645 >seq3 Length=39989001 Score = 98.7 bits (108), Expect = 1e-15 Identities = 174/250 (70%), Gaps = 8/250 (3%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTC---TCATTGTC 11538 |||||| || || | |||||| || |||||||| | || ||| | |||||| Sbjct 3924556 ATCAAGAATTTCAGGTCTATTAGTAGCAGCAATAACTATAACACCATTACTATCATTG-- 3924613 Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT-G 11597 || |||||||| || || | || ||||||| |||||| |||||||||||||| || Sbjct 3924614 -AAACCATCCATTTCAGTTAACAACTGATTAAGTGTTTGCTCTCTCTCATCATTCCCTCC 3924672 Query 11598 GCATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATAC 11657 | || ||| |||| | |||| | || || |||||||||||||||||| | | || Sbjct 3924673 ACCTA-TACCTGCACCTCTTTGCCTCCCAACACTATCAATCTCATCAATGAATATCAAAC 3924731 Query 11658 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAA 11717 | || |||||| || | | || | ||| | || ||| ||||| ||||||| Sbjct 3924732 AAGGCGAATTTTCTTTAGCCTTATTGAACAAATCCCTCACTCTTGAAGCACCAACACCAA 3924791 Query 11718 CAAACATCTC 11727 |||| ||||| Sbjct 3924792 CAAAAATCTC 3924801 >seq6 Length=59463898 Score = 95.1 bits (104), Expect = 2e-14 Identities = 174/254 (69%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 11483 TCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAG 11542 ||||| || || | | ||||| || |||| || | || ||||| | | ||||| Sbjct 13715568 TCAAGAATGTCGGCCCTGTTAGTTGCTGCAACGACAATGATACCAGTATTACCCTCAAAT 13715509 Query 11543 CCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATA 11602 |||||||| || || | | |||||| | |||||||||||||||||||| || | Sbjct 13715508 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTTTGTTCTCTCTCATCATTCCCT---CCA 13715452 Query 11603 CCA---CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 ||| || | | | ||| | || || |||||||| ||||||| |||||||| || Sbjct 13715451 CCAATTCCTGTCCCTCTTTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 13715392 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 || ||| || ||| ||| || | ||| || || | ||||| | ||||||| Sbjct 13715391 GGAGCATTCTCTTTGGCCTTTTTGAATAAATCACGGACACGAGAAGCACCGATACCAACA 13715332 Query 11720 AACATCTCCACAAA 11733 |||||||| ||||| Sbjct 13715331 AACATCTCAACAAA 13715318 >seq4 Length=49191682 Score = 95.1 bits (104), Expect = 2e-14 Identities = 209/313 (67%), Gaps = 8/313 (3%) Strand=Plus/Minus Query 11630 GCATCAATCTCATCAATGAAGACAATACATGGTTGA----TTTTCGCGGGCGATTTCAAA 11685 |||||||||||||||||||| | ||||| || | ||||||| | || ||| Sbjct 25250380 GCATCAATCTCATCAATGAAAATTATACAAGGCGAACTCTTTTTCGCAGCTGA----AAA 25250325 Query 11686 GAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTGCGGCAGA 11745 ||||| | ||||||||||||||| ||||||||||||||||| |||| | || Sbjct 25250324 AAGATCCCTAACCCTTTTGGCACCAACACCAACAAACATCTCTTCAAATTCACTTCCACT 25250265 Query 11746 GCACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCC 11805 ||| | ||| || ||| | ||||| || || |||| ||| | | ||||| || Sbjct 25250264 ACACGAAAAGAAAGGAACACCAGCCTCACCAGCAATAGCTCTGGCCAACATCGTCTTACC 25250205 Query 11806 CGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACTTCCAAAATA 11865 ||||| ||| ||| | || | | ||| || | ||| ||||| | | | | Sbjct 25250204 AGTACCAGGCGGACCAACAAGCAAAACACCTTTAGGAAGCTTCCCACCAAGCCGAGTAAA 25250145 Query 11866 TCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAAT 11925 | || || | | | | | ||| ||||| |||||||||||| | || ||| | || | Sbjct 25250144 CCGCTTAGGATTCCTTAAATAATGAACAATTTCTTCAAGTTCAGCCTTAGCCTCATCCAC 25250085 Query 11926 CCCCTCAACATCA 11938 || | ||||||| Sbjct 25250084 ACCTTTAACATCA 25250072 Score = 84.2 bits (92), Expect = 3e-11 Identities = 242/364 (66%), Gaps = 19/364 (5%) Strand=Plus/Plus Query 27662 CACTTTGCCGCACAAAGTCATGTAGACAATTCATTTACAAGTCCTCTTGGGTTTACTTTA 27721 || ||||| || |||| |||||| |||||||||||| || | | | || || | Sbjct 41130897 CATTTTGCTGCTCAAACTCATGTTGACAATTCATTTGGAAACTCAATGGAATTCACATAT 41130956 Query 27722 GACAATACATATGGTACACATACACTCATTGAAGTCTGTAGGCGTCACATACCAAATGTT 27781 |||| | ||| || |||||| || | |||| || ||| | ||| | |||| Sbjct 41130957 AACAACATATACGGAACACATGTTCTTCTAGAAGCATGCAGGGCT-ACAAATTG--TGTT 41131013 Query 27782 GAA---TTTATACATTTTAGTACAGATGAAGTATACGGTGAATC------AAAAACAGGT 27832 || || || ||| ||||||| |||||||| || |||||| | | | || | | Sbjct 41131014 AAAAGGTTCATTCATGTTAGTACTGATGAAGTTTATGGTGAAACTGATTTAGATACTGAT 41131073 Query 27833 GAACCTTTCACCGAAGACA-CTGGGGTACTTAGACCAACAAATCCATATTCAGCATCAAA 27891 | || ||| ||| || |||| |||||||||||| |||||||| |||| Sbjct 41131074 ATTGGTAACATTGAA-ACATCTCA---ACTTTTACCAACAAATCCTTATTCAGCTACAAA 41131129 Query 27892 AGCGGCGGCCGAAATGATAGTCCGTTCATAT-ATAGAATCATTTGATATGAATATCAAAA 27950 ||| | || |||||| | || | ||| ||||| || | || | | || | || Sbjct 41131130 AGCAGGTGCTGAAATGTTGGTTATGGCTTATCATAGA-TCTTATGGTCTTCCAATAATAA 41131188 Query 27951 TAATTCGCTGTAATAATGTTTATGGTCCAAATCAATACCCGGAGAAACTCATTCCAAAGT 28010 | | | | ||||||||||||||||| |||||||| || || ||||| |||| |||| Sbjct 41131189 CATCTAGAGGAAATAATGTTTATGGTCCTAATCAATATCCTGAAAAACTTGTTCCTAAGT 41131248 Query 28011 TTAT 28014 |||| Sbjct 41131249 TTAT 41131252 >seq1 Length=48359943 Score = 93.3 bits (102), Expect = 5e-14 Identities = 288/442 (65%), Gaps = 8/442 (2%) Strand=Plus/Minus Query 11501 TTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGT 11560 || || || ||||| || | || || || | | ||||| |||||||| || || | Sbjct 19053837 TTGGTTGCTGCAATGACAATGATTCCGGTATTACCCTCAAATCCATCCATTTCTGTCAAA 19053778 Query 11561 AATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCA---CCAGCACTGCGT 11617 | ||| || | || ||||| || |||||||| || |||| |||| | ||| Sbjct 19053777 AGTTGGTTGAGGGTCTGTTCCCTTTCATCATTCCCTCC---ACCAATTCCAGTGCCTCGT 19053721 Query 11618 TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 11677 ||| | || || ||||| || ||||||| || |||||||| || ||| || || Sbjct 19053720 TGCCTTCCTACAGCATCGATTTCATCAACAAAAACAATACAAGGAGCATTCTCTTTTGCC 19053661 Query 11678 ATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTT 11737 | | || | ||| ||||| | ||||| ||||||||||||||||| ||||| | Sbjct 19053660 TTCTTGAATAAATCTCGAACTCGAGAAGCACCAACACCAACAAACATCTCAACAAACTCA 19053601 Query 11738 GCGGCAGAGCACTG-GATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAG 11796 | | ||| | || || ||||| || || |||||| || || || ||| | | Sbjct 19053600 GAACCTGAG-ATTGAGAAAAATGGAACGCCTGCTTCACCAGCAATAGCCTTGGCTAATAA 19053542 Query 11797 GGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCACT 11856 ||||| || || || || ||| ||||||| | ||| || || |||||| | Sbjct 19053541 CGTCTTCCCAGTCCCCGGTGGACCTACGAGAAGAACTCCTTTTGGAATGCGAGCACCAAT 19053482 Query 11857 TCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCTCTTCAAGTTCATCTTTGGC 11916 || | ||||| || | || ||||| ||||| | ||| || || | |||||| Sbjct 19053481 AGCAGTGAACCTCTCAGGCTTTTTAAGAAACTCCACTACCTCCATAAAATCTTGTTTGGC 19053422 Query 11917 CGCGTCAATCCCCTCAACATCA 11938 | || | ||| |||||||| Sbjct 19053421 TTCATCCACCCCAGCAACATCA 19053400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627976050199200