Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq55 172 6e-38 seq1 125 8e-24 seq104 109 6e-19 seq6 104 3e-17 seq5 93.3 5e-14 seq4 82.4 9e-11 >seq55 Length=606834 Score = 172 bits (190), Expect = 6e-38 Identities = 384/568 (68%), Gaps = 15/568 (3%) Strand=Plus/Plus Query 94683 GTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTG 94742 |||||| | ||| | ||||||||| | | ||| | || || | || |||| || Sbjct 249980 GTATATAAGCGATTCGGTTGAGAAGAATCGTTTGTTTCATGCTATTGAGACGATTCCTTG 250039 Query 94743 TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGC 94802 ||||| |||||||||||||||||| |||| ||| | ||| | |||| ||| ||||| Sbjct 250040 TATTCGTAAGAAAGCGGATTGGGCTTTGAAATGGATCGATTC---GTCGGATTCGTTTGC 250096 Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 ||| || || | || ||||| || ||||| ||||| || ||||||||| ||||| || Sbjct 250097 TGAAAGAATCGTTGCTTTTGCTTGCGTTGAAGGTATTTTTTTCTCTGGTAGTTTCTGTGC 250156 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 |||| |||||| || || || ||| | ||||| ||| | || || ||||||||||| Sbjct 250157 AATTTTTTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTAT 250216 Query 94923 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGT 94980 || |||||||| ||||| || || ||||| | | | |||| | ||||| | Sbjct 250217 TTCGCGTGACGAAGGACTTCATTGTGATTTTGCTTGTTTG--CTTTATTCACTATTGAGG 250274 Query 94981 ATTAAACCAACGACTGAG--ACTA-TTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAG 95037 | ||||| || |||| | | | | ||||| | || || |||||||||||| Sbjct 250275 AATAAAC---TGAGTGAGGAGCGAGTGAAGAAGATTGTGAGTGATGCGGTTGAGATTGAG 250331 Query 95038 AAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATG 95097 | | || | | || || ||||| ||||| | |||| |||||| ||| ||| Sbjct 250332 AGGGAGTTTGTTTGTGACGCGCTTCCGTGCGCGTTGGTCGGGATGAATGGTGATTTGATG 250391 Query 95098 TCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGG-GGTGCCTCCAAT 95156 | |||||||||| || | ||||| |||||| || | || ||| | | Sbjct 250392 AGCCAGTATATTGAGTTCGTTGCCGATAGGTTGTTGGGTGAGCTTGGTTGTG-GGAAAGT 250450 Query 95157 TTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAA 95216 || || ||||||| ||||| | |||||| ||| || | |||||||| || Sbjct 250451 TTATAATGTTCAGAATCCTTTTGATTGGATGGAGTTGATTTCTCTTCAAGGGAAGACTAA 250510 Query 95217 CTTCTTCGAAAAGAGGGTTGGGGACTAT 95244 ||| || || ||| | |||||||| ||| Sbjct 250511 CTTTTTTGAGAAGCGCGTTGGGGAATAT 250538 Score = 172 bits (190), Expect = 6e-38 Identities = 384/568 (68%), Gaps = 15/568 (3%) Strand=Plus/Plus Query 94683 GTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTG 94742 |||||| | ||| | ||||||||| | | ||| | || || | || |||| || Sbjct 258663 GTATATAAGCGATTCGGTTGAGAAGAATCGTTTGTTTCATGCTATTGAGACGATTCCTTG 258722 Query 94743 TATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGC 94802 ||||| |||||||||||||||||| |||| ||| | ||| | |||| ||| ||||| Sbjct 258723 TATTCGTAAGAAAGCGGATTGGGCTTTGAAATGGATCGATTC---GTCGGATTCGTTTGC 258779 Query 94803 TGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGC 94862 ||| || || | || ||||| || ||||| ||||| || ||||||||| ||||| || Sbjct 258780 TGAAAGAATCGTTGCTTTTGCTTGCGTTGAAGGTATTTTTTTCTCTGGTAGTTTCTGTGC 258839 Query 94863 TATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 |||| |||||| || || || ||| | ||||| ||| | || || ||||||||||| Sbjct 258840 AATTTTTTGGCTTAAAAAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTAT 258899 Query 94923 CTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGGAACTTTTCAAATTATTGCGT 94980 || |||||||| ||||| || || ||||| | | | |||| | ||||| | Sbjct 258900 TTCGCGTGACGAAGGACTTCATTGTGATTTTGCTTGTTTG--CTTTATTCACTATTGAGG 258957 Query 94981 ATTAAACCAACGACTGAG--ACTA-TTCATTCTATTGTTAAGGAAGCCGTTGAGATTGAG 95037 | ||||| || |||| | | | | ||||| | || || |||||||||||| Sbjct 258958 AATAAAC---TGAGTGAGGAGCGAGTGAAGAAGATTGTGAGTGATGCGGTTGAGATTGAG 259014 Query 95038 AAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAAAAATG 95097 | | || | | || || ||||| ||||| | |||| |||||| ||| ||| Sbjct 259015 AGGGAGTTTGTTTGTGACGCGCTTCCGTGCGCGTTGGTCGGGATGAATGGTGATTTGATG 259074 Query 95098 TCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGG-GGTGCCTCCAAT 95156 | |||||||||| || | ||||| |||||| || | || ||| | | Sbjct 259075 AGCCAGTATATTGAGTTCGTTGCCGATAGGTTGTTGGGTGAGCTTGGTTGTG-GGAAAGT 259133 Query 95157 TTGGAACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAA 95216 || || ||||||| ||||| | |||||| ||| || | |||||||| || Sbjct 259134 TTATAATGTTCAGAATCCTTTTGATTGGATGGAGTTGATTTCTCTTCAAGGGAAGACTAA 259193 Query 95217 CTTCTTCGAAAAGAGGGTTGGGGACTAT 95244 ||| || || ||| | |||||||| ||| Sbjct 259194 CTTTTTTGAGAAGCGCGTTGGGGAATAT 259221 >seq1 Length=48359943 Score = 125 bits (138), Expect = 8e-24 Identities = 308/461 (67%), Gaps = 12/461 (3%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 || || || ||| | | || || || || ||||||| || || || | | ||||| Sbjct 19053855 TCGAGAATGTCAGCCCTGTTGGTTGCTGCAATGACAATGATTCCGGTATTACCCTCAAAT 19053796 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| ||||||||||||||||| | || ||||||| |||||||||| || | Sbjct 19053795 CCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGTTCCCTTTCATCATTCCCT---CCA 19053739 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| |||| | |||||| |||| || ||||| || ||||||| || || || || Sbjct 19053738 CCAATTCCAGTGCCTCGTTGCCTTCCTACAGCATCGATTTCATCAACAAAAACAATACAA 19053679 Query 9734 GGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAA 9791 || ||| || || |||| || | ||| || || || || || ||||||| Sbjct 19053678 GGAGCATTCTCTTTTGC--CTTCTTGAATAAATCTCGAACTCGAGAAGCACCAACACCAA 19053621 Query 9792 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9850 |||||||||| ||||| | | | | | |||| || || || || | |||||| Sbjct 19053620 CAAACATCTCAACAAACTCAGAACCTG-AGATTGAGAAAAATGGAACGCCTGCTTCACCA 19053562 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 ||||| || ||| | | ||||| || || || || ||| |||| || | ||| Sbjct 19053561 GCAATAGCCTTGGCTAATAACGTCTTCCCAGTCCCCGGTGGACCTACGAGAAGAACTCCT 19053502 Query 9911 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATT 9970 |||||| || ||| | || | | |||||||| | |||||||| ||||| | Sbjct 19053501 TTTGGAATGCGAGCACCAATAGCAGTGAACCTCTCAGGCTTTTTAAGAAACTCCACTACC 19053442 Query 9971 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 || || || | |||||| | || | ||| ||||||| Sbjct 19053441 TCCATAAAATCTTGTTTGGCTTCATCCACCCCAGCAACATC 19053401 >seq104 Length=244920 Score = 109 bits (120), Expect = 6e-19 Identities = 150/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 94736 TTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT 94795 |||| ||||||| |||||||||||||||||| |||| ||| | ||| | |||| || Sbjct 172285 TTCCTTGTATTCGTAAGAAAGCGGATTGGGCTTTGAAATGGATCGATTC---GTCGATTT 172229 Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 || | ||| || || | || ||||| || ||||| ||||| || |||||| || | Sbjct 172228 GATT-GTTGAAAGAATCGTTGCTTTTGCTTGCGTTGAAGGTATTTTTTTCTCTAGTAGTT 172170 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 | || || || | |||||| || || || ||| | |||| ||| | || || |||| Sbjct 172169 TATGTGCGATATTTTGGCTTAAAAAACGTGGTTTAATGCATGGTTTAACTTTTTCAAACG 172110 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCA 94943 ||||||| | ||||||| ||||| || Sbjct 172109 AGCTTATTTTGTGTGACGAAGGACTTCA 172082 >seq6 Length=59463898 Score = 104 bits (114), Expect = 3e-17 Identities = 176/254 (69%), Gaps = 6/254 (2%) Strand=Plus/Minus Query 9557 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9616 ||||| || || | | || || || || | ||||| ||||| || | | ||||| Sbjct 13715568 TCAAGAATGTCGGCCCTGTTAGTTGCTGCAACGACAATGATACCAGTATTACCCTCAAAT 13715509 Query 9617 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9676 |||||||| |||||||||||||| || | |||||||| | ||||||||| || | Sbjct 13715508 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTTTGTTCTCTCTCATCATTCCCT---CCA 13715452 Query 9677 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 9733 ||| || | | | ||| |||| || |||||||| ||||||| ||||| ||||| Sbjct 13715451 CCAATTCCTGTCCCTCTTTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATGCAA 13715392 Query 9734 GGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACA 9793 || ||| || || || || | ||| || ||||| || || | ||||||| Sbjct 13715391 GGAGCATTCTCTTTGGCCTTTTTGAATAAATCACGGACACGAGAAGCACCGATACCAACA 13715332 Query 9794 AACATCTCCACAAA 9807 |||||||| ||||| Sbjct 13715331 AACATCTCAACAAA 13715318 >seq5 Length=48169137 Score = 93.3 bits (102), Expect = 5e-14 Identities = 308/472 (65%), Gaps = 14/472 (3%) Strand=Plus/Plus Query 9526 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9585 |||||| | || || | ||| | ||| |||||| | |||| | ||| || || || Sbjct 31480364 ATCAAACCTTCCAGGTCTAAGCAACGCCGAATCAAGAACATCAGGTCTATTAGTAGCAGC 31480423 Query 9586 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 | |||| || ||| | | | | ||| ||||||||||| ||||| | || ||||| Sbjct 31480424 CAAAACAATAACACCAGAATTACCAGAAAATCCATCCATCTCCGTCAACAACTGATTAAT 31480483 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCCAC 9702 ||||||||||| || |||||| | |||| ||||| | | || | || || Sbjct 31480484 AGTTTGTTCCCTCTCGTCATTCCC---ACCACCAAGTCCAGCTCCTCTCTGTCTCCCAAC 31480540 Query 9703 GGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAAG 9760 |||||||| ||||||||||| || || || || ||||| || | ||||| Sbjct 31480541 AGCATCAATTTCATCAATGAAAACAATACAAGG--CGCTTTCGACTTCGCTTTCTCAAAC 31480598 Query 9761 AGATCCCGTACACGCTTG--GCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 | ||||| || || || | || || ||||||||||||| |||||||| | | || | Sbjct 31480599 AAATCCC-TA-ACCCTAGAAGCACCAACACCAACAAACAGTTCCACAAATTCCGAAGCCG 31480656 Query 9819 AACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTAC 9878 ||| | ||| || | | |||||| || | || || || | || || || | Sbjct 31480657 CACACGAAAAGAACGGTGTACCGGCTTCACCGGCTACCGCCCGTGCCAATAGTGTTTTTC 31480716 Query 9879 CCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCAAAGT 9938 | || || || ||| | | || ||| |||||||| || || | || || Sbjct 31480717 CGGTTCCCGGTGGCCCCACCAAAAGACATCCTTTCGGAATCTTAGCACCCAATGCAGTGT 31480776 Query 9939 ATCTCTCAGGTTGCTTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGC 9990 | | ||||| | ||| | |||||| |||| ||||| |||||| ||| || Sbjct 31480777 ACTTATCAGGATTCTTCAAAAAATCAACAACTTCTTGTAATTCAAGTTTCGC 31480828 >seq4 Length=49191682 Score = 82.4 bits (90), Expect = 9e-11 Identities = 112/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 28393 ACCAACCAACCCATATTCGGCTTCAAAGGCGGCGGCAGAAATGATTGTGATGTCATA-CA 28451 |||||| || || ||||| ||| |||| || | || |||||| | || ||| | || || Sbjct 41131103 ACCAACAAATCCTTATTCAGCTACAAAAGCAGGTGCTGAAATGTTGGTTATGGCTTATCA 41131162 Query 28452 TTGAATCATTTAATATG--AATATTAAAATTTTAAGATGTAACAATGTGTATGGTCCGAA 28509 | || || | | | | |||| ||| || | ||| | || ||||| |||||||| || Sbjct 41131163 TAGA-TCTTATGGTCTTCCAATAATAACATCT--AGAGGAAATAATGTTTATGGTCCTAA 41131219 Query 28510 TCAATATCCAGAAAAACTCATTCCAAAGTTTA 28541 ||||||||| |||||||| |||| ||||||| Sbjct 41131220 TCAATATCCTGAAAAACTTGTTCCTAAGTTTA 41131251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583208838753480