Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq6 111 1e-19 seq5 86.0 4e-12 >seq6 Length=59463898 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||| || || || || || || || ||| |||| || || || | Sbjct 17146115 ATGCAAATCTTTGTCAAGACCCTCACAGGAAAGACCATCACACTTGAGGTAGAGAGTTCT 17146174 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||| ||| |||||||| || |||| || | Sbjct 17146175 GACACCATAGACAAT--GTCAAGGCAAAGATACAAGACAAAGAGGGCATTCCACCAGACC 17146232 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| ||||| || | || || | ||| | |||| ||||||||| Sbjct 17146233 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGACGAACCTTGGCCGATTACA 17146292 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| ||||| ||| ||| | ||| | ||||||||| | ||||| || Sbjct 17146293 ACATTCAAAAGGAGTCAACTCTCCATCTTGTTTTGCGTCTCCGTGGTGG 17146341 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||| ||||| ||||||||||| || ||||| | || || || ||| | Sbjct 17161901 ATGCAGATTTTCGTGAAGACTCTTACTGGCAAGACAATTACTTTGGAGGTAGAGAGCTCA 17161960 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| || || || ||| ||||| || ||| |||| || | Sbjct 17161961 GACACAATTGACAAT--GTGAAGGCTAAGATACAGGACAAGGAGGGTATTCCCCCAGACC 17162018 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| |||| |||||||| ||||| || | || || | || | |||| | ||||||| Sbjct 17162019 AGCAAAGGTTGATTTTTGCTGGAAAGCAGCTTGAAGATGGCCGAACCTTGGCTGATTACA 17162078 Query 27968 ACATCCAAAAAGA 27980 ||||||| ||||| Sbjct 17162079 ACATCCAGAAAGA 17162091 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || || ||||| || || || || | || || ||||| | Sbjct 20998203 ATGCAAATTTTTGTCAAGACCCTTACCGGAAAGACAATAACTTTGGAGGTTGAAAGTTCT 20998262 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| || || ||||| |||||||| ||| |||| || | Sbjct 20998263 GATACAATAGATAAT--GTGAAGGCGAAAATTCAGGACAAAGAGGGTATTCCTCCAGATC 20998320 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || ||||||||||||| || || ||||| || | ||| | || | ||||| | Sbjct 20998321 AGCAGAGGCTAATTTTTGCCGGCAAGCAGTTGGAGGATGGACGTACTCTGGCTGATTATA 20998380 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 | ||||| || || |||||||| ||||||||| | | ||||| ||| Sbjct 20998381 ATATCCAGAAGGAATCTACTTTGCACTTGGTTTTGAGGCTTCGTGGTGGC 20998430 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| |||||||| || ||||||||||| |||||| | || || |||||| | Sbjct 20998431 ATGCAAATATTTGTGAAGACACTTACTGGGAAGACTATTACCTTAGAAGTGGAAAGCTCT 20998490 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || ||| ||| || || || || ||| |||| || | Sbjct 20998491 GACACAATTGATAAT--GTGAAAGCAAAGATTCAGGATAAGGAGGGTATTCCCCCAGATC 20998548 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | |||||||| || || || ||||| || | || | ||| | ||||||| Sbjct 20998549 AGCAAAGGCTTATTTTTGCTGGCAAGCAGTTGGAGGATGGTCGTACTTTGGCAGATTACA 20998608 Query 27968 ACATCCAAAAAGA 27980 | || || ||||| Sbjct 20998609 ATATTCAGAAAGA 20998621 >seq5 Length=48169137 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 10/232 (4%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || |||||||| || || || ||| ||||| | || || || || || Sbjct 36920510 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATTACCCTAGAGGTAGAGAGTTCC 36920569 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| || || |||||| ||||| || ||| |||| | Sbjct 36920570 GA-----TACAATCGACAACGTGAAGGCAAAAATTCAAGACAAGGAGGGTATTCCTCCAG 36920624 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| || || || |||||||||||||| || |||| | | | || | |||| Sbjct 36920625 ACCAGCAACGATTGATCTTCGCCGGAAAACAATTAGAAGACGGAAGGACACTGGCGGATT 36920684 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| |||||||| || || | |||||||| | || | || ||||| Sbjct 36920685 ACAATATCCAAAAGGAATCAACGCTTCATTTGGTGCTTCGACTTCGCGGCGG 36920736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355831489680729