Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 9e-16 seq4 91.5 1e-13 >seq6 Length=59463898 Score = 98.7 bits (108), Expect = 9e-16 Identities = 153/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 ||||| ||||| || || ||| ||| ||||| || |||||||||||||| || | | | Sbjct 20998189 CGTAAAACCAAGTGAAGTGTGGACTCCTTTTGGATGTTATAATCGGCAAGAGTCCTTCCA 20998130 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTT 39188 || ||||||||||| || ||||| ||||| | |||||| || |||||| | | ||| || Sbjct 20998129 TCTTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGG-ATACCCTCCTT 20998071 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGAT 39248 || || || ||| | | | | ||||| ||| || |||| || || Sbjct 20998070 ATCTTGAATCTTGGCTTTCACATTATCAATAGTATCTGAACTCTCTACCTCCAAAGTAAT 20998011 Query 39249 ACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | ||||| |||| || |||||||| |||||||| Sbjct 20998010 AGTCTTTCCTGTCAAAGTCTTAACAAAAATTTGCAT 20997975 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/216 (71%), Gaps = 10/216 (5%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| |||||| || || || ||||| || | ||||| | || || Sbjct 17146096 CACCAAATGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGCCAAAGTTCGGCCATCTTC 17146037 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||||||| ||||| || || | ||| ||||| | || | || |||||||||| Sbjct 17146036 AAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGAATGCCCTCTTTGTCCTG 17145977 Query 39195 GATTTT--CTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATA 39249 || || | || | |||| | ||||| ||| |||||| || | ||||| Sbjct 17145976 AATCTTAGCCTTTACATTGTCG--ATGGTATCAGAGCT---CTCCACCTCAAGAGTGATG 17145922 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATC 39285 | ||||| || || || || ||||| ||||||||| Sbjct 17145921 GTCTTTCCGGTGAGAGTCTTCACAAATATTTGCATC 17145886 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||||||||| || || ||||| ||||| || || | || || Sbjct 17161426 CACCAAATGAAGGGTTGACTCTTTTTGGATGTTGTAATCAGCAAGGGTACGCCCATCCTC 17161367 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCA 39193 ||||| ||||| ||||| || |||||||||||||| |||||| | || || |||| | Sbjct 17161366 CAGCTGCTTGCCTGCAAAAATGAGACGCTGCTGGTCTGGTGGG-ATGCCTTCCTTGT-CT 17161309 Query 39194 TGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTT 39252 ||| | | | | | | | | | | ||||| ||| || || | ||||| || Sbjct 17161308 TGAATCTTGGCCTTAACATTGTCTATGGTATCTGAACTCTCAACTTCGAGAGTGATGGTT 17161249 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || || || || || || ||||| |||||||||| || Sbjct 17161248 TTGCCAGTGAGGGTCTTCACAAATATTTGCATCTATA 17161212 Score = 93.3 bits (102), Expect = 4e-14 Identities = 149/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||||| || ||||| ||||| || | ||||| | || || Sbjct 17161654 CACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAATCTGCTAAAGTTCGGCCATCCTC 17161595 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||||||| ||||| || || | ||| ||||| | || | |||||| |||||| Sbjct 17161594 AAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGAATGCTCTCCTTGTCCTG 17161535 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 || || |||| | | | ||||| ||| ||||| || | ||||| | Sbjct 17161534 AATCTTGGCCTTGACATTGTCAATAGTATCAGAGCT---TTCCACCTCAAGGGTGATCGT 17161478 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||||| || || || || || ||||||||||| Sbjct 17161477 CTTTCCAGTGAGAGTCTTCACGAAGATTTGCAT 17161445 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/243 (70%), Gaps = 4/243 (2%) Strand=Plus/Minus Query 39046 AATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATA 39105 ||| | | || ||| ||||| || || | ||| ||||| || ||| |||||||| || Sbjct 20997301 AATATCTGCATGCCACCTCTCAACCGAAGCACTAAATGAAGGGTGGATTCTTTTTGGATG 20997242 Query 39106 TTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGC 39165 || ||||| ||||| || || | || || | ||||| || || || ||||| | || Sbjct 20997241 TTGTAATCAGCAAGGGTACGGCCATCTTCTAATTGTTTACCGGCGAAGATAAGTCTTTGT 20997182 Query 39166 TGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCC-ACCGTAT 39223 || || |||||| | || || ||||| ||| || ||| | ||| | | | |||| Sbjct 20997181 TGATCTGGTGGGATCCCT-TCCTTGTCTTGGATCTTAGCTTTCA-CGTTGTCTATGGTAT 20997124 Query 39224 CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 || |||||| || | ||||| |||| || |||| ||||| || |||||||||| Sbjct 20997123 CGGAACTCTCCACCTCAAGGGTGATGGTTTTGCCGGTCAATGTTTTCACGAAGATTTGCA 20997064 Query 39284 TCT 39286 ||| Sbjct 20997063 TCT 20997061 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/118 (77%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || ||| ||| ||||| || || ||||| || | ||||| | || || Sbjct 17145868 CACCAAATGAAGTGTGGACTCCTTTTGGATGTTGTAATCTGCCAAAGTTCGGCCATCTTC 17145809 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTC 39191 |||||||||||||||||| || || | ||| ||||| |||||| | || || ||||| Sbjct 17145808 AAGCTGTTTGCCCGCAAAGATGAGCCTCTGTTGGTCTGGTGGG-ATGCCTTCCTTGTC 17145752 >seq4 Length=49191682 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/219 (70%), Gaps = 3/219 (1%) Strand=Plus/Plus Query 39068 AGCGTAACACCAA-ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 ||| ||| | ||| ||| ||||| |||||| || ||||||||||| |||||||||| Sbjct 19846638 AGCCTAAGAACAAGATGAAGCGTAGACTCTTTCTGAATATTATAATCTGCAAGTGTTCTC 19846697 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCT 39186 |||| || | |||||| || || || || | |||||||| || | || | | ||| Sbjct 19846698 CCGTCTTCTAACTGTTTTCCGGCGAAGATCAACCGCTGCTGATCCGGTGGAATTCCTTCT 19846757 Query 39187 TTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGT 39245 ||||| |||||| ||| | ||| | | | || ||| || || || || | ||| Sbjct 19846758 TTGTCTTGGATTTTGGCTTTCA-CGTTGTCGATTGTGTCGGAGGATTCTACTTCTAGCGT 19846816 Query 39246 GATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || || ||||| || ||||| ||||| Sbjct 19846817 TATGGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 19846855 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || ||||||||||| ||||| || ||| | || ||||| ||||| || ||||| Sbjct 19846437 TCCTTCTGAATATTATAATCAGCAAGAGTGCGTCCATCTTCAAGTTGTTTACCAGCAAAA 19846496 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||||||||| || || | || | | ||| || || || ||| ||| | | Sbjct 19846497 ATAAGACGCTGTTGATCCGGTGGAATTCCCTCCTTATCTTGAATCTTCGCTTTCACATTA 19846556 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | |||||| |||||| |||| || || | || ||||| ||||| || ||| Sbjct 19846557 TCAATCGTATCAGAACTCTCCACCTCCAAAGTAATCGTCTTCCCCGTTAGCGTCTTCACA 19846616 Query 39274 AAGATTTGCAT 39284 || || ||||| Sbjct 19846617 AAAATCTGCAT 19846627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429508289534951