Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq55 228 1e-54 seq5 125 1e-23 seq6 116 5e-21 seq104 111 2e-19 >seq55 Length=606834 Score = 228 bits (252), Expect = 1e-54 Identities = 596/900 (66%), Gaps = 12/900 (1%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| |||||||| || || || ||||| ||||| ||||| || |||| | || || Sbjct 250544 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTCTTCCCTTGAAGAGAAATCAA 250485 Query 47909 TTCCATAAAATCAAATGGATTAACTG--CATTATAAAtttttttAAATCCTAATTCTGAA 47966 ||||| ||||||| ||||| ||| ||||||||| ||| | | || | || Sbjct 250484 CTCCATCCAATCAAAAGGATT--CTGAACATTATAAACTTTCCCACAACCAAGCTCACCC 250427 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT- 48025 | || ||||| |||||||| || ||||| |||||| |||| |||||| || | Sbjct 250426 AACAACCTATCGGCAACGAACTCAATATACTGGCTCATCAAATCACCATTCATCCCGACC 250367 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACT-A 48084 || || || || || || || |||||| || || || ||||| ||| | Sbjct 250366 AACGCGCAC-GGAAGCGCGTCACAAACAAACTCCCTCTCAATCTCAACCGCATC-ACTCA 250309 Query 48085 TTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATG 48144 ||| | || |||||||| || || | ||| || | | | ||||| | Sbjct 250308 CAATCTTCTTCACTCGCTCCTCACTCAGTTTATTCCTCAATAGTGAATAAAGCAAACAAG 250249 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 |||||||||||||||| ||||| || | ||| | ||||| ||||| || | ||| | Sbjct 250248 CAAAATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGTTAAACCAG 250189 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264 |||||| ||||||||||| |||||||| ||||| |||| ||||| || || || | Sbjct 250188 GCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTACCAGAGAAAAAAATAC 250129 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--ATCCA 48322 |||| ||| ||||| || | | ||| || | || | | || | | ||||| Sbjct 250128 CTTCAACGCAAGCAAAAGCA--ACGATTCTTTCAGCAAACGAATCCGACGAATCGATCCA 250071 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 |||||||| || ||||| | |||||| || || || ||||||| ||| | Sbjct 250070 TTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGCATGAAACAA 250011 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 | || || ||| ||| | | || || || | | |||||||||||||| || Sbjct 250010 ACGATTCTTCTCAACCGAATCGCTTATATACGTTTCAAGAAGGAGACTATACATTTCAGA 249951 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || ||||| ||||| || || ||||| ||||||||| | ||| |||| | || || Sbjct 249950 ATGTATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCGCCTCTGAAACTTGAAC 249891 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | |||| | |||| | |||||| || || || || || || ||||| Sbjct 249890 TTCTTTCATGAATCTTCCAGCAAGATTCTCTAAAACGATGCCGTCGGATGCGGCGAAAAA 249831 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 ||| | || || | ||| | | |||| | ||| | || ||||| | | | Sbjct 249830 TGCAAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAATTGTTCCAATGTTGAAG 249771 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 ||||| ||||| ||| |||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 249770 ATCTTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACAT 249711 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAG 48742 | ||| || | | ||||| |||||||| ||| ||| | | ||| ||| ||||| Sbjct 249710 TTCCCAAATTTTAGGGTATTCAATTGGGAACATACAAAAACGGTCTGGGTTTGGAGCAAG 249651 Score = 228 bits (252), Expect = 1e-54 Identities = 596/900 (66%), Gaps = 12/900 (1%) Strand=Plus/Minus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| |||||||| || || || ||||| ||||| ||||| || |||| | || || Sbjct 259227 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTCTTCCCTTGAAGAGAAATCAA 259168 Query 47909 TTCCATAAAATCAAATGGATTAACTG--CATTATAAAtttttttAAATCCTAATTCTGAA 47966 ||||| ||||||| ||||| ||| ||||||||| ||| | | || | || Sbjct 259167 CTCCATCCAATCAAAAGGATT--CTGAACATTATAAACTTTCCCACAACCAAGCTCACCC 259110 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTAT- 48025 | || ||||| |||||||| || ||||| |||||| |||| |||||| || | Sbjct 259109 AACAACCTATCGGCAACGAACTCAATATACTGGCTCATCAAATCACCATTCATCCCGACC 259050 Query 48026 AAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACT-A 48084 || || || || || || || |||||| || || || ||||| ||| | Sbjct 259049 AACGCGCAC-GGAAGCGCGTCACAAACAAACTCCCTCTCAATCTCAACCGCATC-ACTCA 258992 Query 48085 TTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATG 48144 ||| | || |||||||| || || | ||| || | | | ||||| | Sbjct 258991 CAATCTTCTTCACTCGCTCCTCACTCAGTTTATTCCTCAATAGTGAATAAAGCAAACAAG 258932 Query 48145 CAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGG 48204 |||||||||||||||| ||||| || | ||| | ||||| ||||| || | ||| | Sbjct 258931 CAAAATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGTTAAACCAG 258872 Query 48205 GCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGC 48264 |||||| ||||||||||| |||||||| ||||| |||| ||||| || || || | Sbjct 258871 GCATTAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTACCAGAGAAAAAAATAC 258812 Query 48265 CTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT--ATCCA 48322 |||| ||| ||||| || | | ||| || | || | | || | | ||||| Sbjct 258811 CTTCAACGCAAGCAAAAGCA--ACGATTCTTTCAGCAAACGAATCCGACGAATCGATCCA 258754 Query 48323 CCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 48382 |||||||| || ||||| | |||||| || || || ||||||| ||| | Sbjct 258753 TTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGCATGAAACAA 258694 Query 48383 AAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGA 48442 | || || ||| ||| | | || || || | | |||||||||||||| || Sbjct 258693 ACGATTCTTCTCAACCGAATCGCTTATATACGTTTCAAGAAGGAGACTATACATTTCAGA 258634 Query 48443 GTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTAC 48502 || ||||| ||||| || || ||||| ||||||||| | ||| |||| | || || Sbjct 258633 ATGTATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCGCCTCTGAAACTTGAAC 258574 Query 48503 CTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAA 48562 || | |||| | |||| | |||||| || || || || || || ||||| Sbjct 258573 TTCTTTCATGAATCTTCCAGCAAGATTCTCTAAAACGATGCCGTCGGATGCGGCGAAAAA 258514 Query 48563 TGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGAT 48622 ||| | || || | ||| | | |||| | ||| | || ||||| | | | Sbjct 258513 TGCAAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAATTGTTCCAATGTTGAAG 258454 Query 48623 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACAT 48682 ||||| ||||| ||| |||||||| || ||||| ||||| || || |||||||| ||||| Sbjct 258453 ATCTTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACAT 258394 Query 48683 ATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTTTGCAAG 48742 | ||| || | | ||||| |||||||| ||| ||| | | ||| ||| ||||| Sbjct 258393 TTCCCAAATTTTAGGGTATTCAATTGGGAACATACAAAAACGGTCTGGGTTTGGAGCAAG 258334 >seq5 Length=48169137 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || |||||||| | ||| | ||| |||| |||| | || | || |||||||| |||||| Sbjct 35185793 CCACCCTGATCAACATAGCGGGCAGTGTCATTAAACACACGCAGCATTGGAACAATACCA 35185734 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| || |||||||||||| ||| ||||| ||| || || || ||| ||| || Sbjct 35185733 TTAGACGTCCCATTTGTTCCACGAATGTAACTACCATGGGCACGTATGTTATGAATAGAA 35185674 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||||||||| ||| || | ||| || ||||||||||| || || Sbjct 35185673 ACACCAATTCCTCCTGCAGATTTACTAATAATAGCACACTCCTTCAATGTATCATAAATC 35185614 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| ||||| ||||| ||||| Sbjct 35185613 CCCTCAATACTATCATCTTTCATG 35185590 Score = 113 bits (124), Expect = 6e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||||||||||| ||| | || ||| ||| |||| || |||||| ||| |||| ||| Sbjct 35186277 TCTCTTTCATACTGAATGTACAGCTTCTCATATTCTTCACCCCAACAATCTGCCAAACCA 35186218 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||||| ||||| | ||| ||||| || |||| || ||||| || ||||||| Sbjct 35186217 GGTGCTTCATTGGGGCAAAACAAAGACCATTCCCCATTGCTCTGAACTCTTTCCATAAAG 35186158 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| || ||| ||||| |||||| | | ||| ||||| Sbjct 35186157 AGATCAGGCACCCAAAGGGCATAAAATAAATCTCGAGCACGATGCTCTTC 35186108 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || || || || || || |||||| ||| ||| | || | Sbjct 35185462 GTCCCAGCATTGAAAAGAGTTGGCGAAGCGTGAGTGAACCATCTTTGAGACATTAAGTGA 35185403 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||| || ||| |||||||| || | ||||||||| || | || | ||||||| Sbjct 35185402 TAAGTTTTAACAGCAGATTCTATATCATCCTTATGAATTCCAACAGAAACCCTCATCAAC 35185343 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCAA 78577 ||||||||||| ||||| | | ||| | || | |||||||| || ||| | || | Sbjct 35185342 ATATGCTGAGGCCTTTCCA-CAACTTTTCCTTGAACTTTCAACAGATAAGATCTCTCTAG 35185284 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| || ||||| || | || ||| || || || ||||| || Sbjct 35185283 GGTTTTGAATCCAAAGTAATCATAGTCAAAATCCCTATCATAAATTAT 35185236 >seq6 Length=59463898 Score = 116 bits (128), Expect = 5e-21 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || |||||||| | ||| | ||| |||| |||| | || | | |||||||| |||||| Sbjct 7426928 CCACCCTGATCAACATAGCGGGCAGTGTCATTAAACACACGGAGCATTGGAACAATACCA 7426869 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 |||||||| ||||||||||| ||| ||||| ||| ||| || || ||| || || Sbjct 7426868 TTAGATGTCCCATTTGTTCCTCGAATGTAACTACCATGTGCACGTATGTTATGAACAGAA 7426809 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || ||||||||||| ||| || | ||| || ||||| ||||| || || Sbjct 7426808 ACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTTCAAAGTATCATAAATC 7426749 Query 78339 CCCTCTATACTGTCATCCATCATG 78362 ||||| ||||| ||||| ||||| Sbjct 7426748 CCCTCAATACTATCATCTTTCATG 7426725 Score = 113 bits (124), Expect = 6e-20 Identities = 127/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 ||||| ||||| ||||| || ||| ||| |||| || |||||| ||| |||| ||| Sbjct 7427394 TCTCTCTCATACTGAGTGTACAGCTTCTCATATTCTTCACCCCAACAATCTGCCAAACCA 7427335 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || |||||| ||||| | ||| ||||| || |||| | |||||| || ||||||| Sbjct 7427334 GGCGCTTCATTAGGGCAAAACAAAGACCATTCCCCATTGCTCCTAACTCTTTCCATAAAG 7427275 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 |||||||| | ||| || ||| ||||| |||||| | | ||| ||||| Sbjct 7427274 AGATCAGGCACCCAAAGGGCATAAAATAAATCTCGAGCACGATGCTCTTC 7427225 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| || ||||| | | ||| | || | Sbjct 7426602 GTCCCAGCATTGAAAAGAGTTGGAGAAGCATGAGTGAACCACCTCTGAGACATTAAGTGA 7426543 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||| || ||| |||||||| || | ||||||||| || | || | ||||||| Sbjct 7426542 TAAGTTTTAACAGCAGATTCTATATCATCCTTATGAATTCCAACAGAAACCCTCATCAAC 7426483 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCAA 78577 ||||||||||| ||||| | | ||| | || | |||||||| || ||| | || | Sbjct 7426482 ATATGCTGAGGCCTTTCTA-CAACTTTTCCTTCAACTTTCAACAGATAAGATCTCTCGAG 7426424 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||| || ||||| || | || ||| || || || ||||| || Sbjct 7426423 GGTTTTGAATCCAAAGTAATCATAATCAAAATCCCTATCATAAATTAT 7426376 >seq104 Length=244920 Score = 111 bits (122), Expect = 2e-19 Identities = 242/358 (68%), Gaps = 7/358 (2%) Strand=Plus/Plus Query 48138 AAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAA-TTCGTTAGAAAATGT 48196 ||||| || |||||||||||||| ||||| || | || || ||| ||||| ||||| || Sbjct 172064 AAACAAGCGAAATCACAATGAAGTCCTTCGTCAC-ACAAAATAAGCTCGTTTGAAAAAGT 172122 Query 48197 GAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAA 48256 | ||| |||||| ||||||||||| ||||||||||| || ||| | ||| || Sbjct 172123 TAAACCATGCATTAAACCACGTTTTTTAAGCCAAAATATCGCACATAAACTACTAGAGAA 172182 Query 48257 GAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG-- 48314 || || ||||| ||| ||||| || | ||| || | | | ||| | Sbjct 172183 AAAAATACCTTCAACGCAAGCAAAAGCAACGATTCTTTCAAC---AATCAAATCGACGAA 172239 Query 48315 TGTATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCA 48374 | ||||| |||||||| || ||||| | |||||| || || || |||||| Sbjct 172240 TCGATCCATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGCA 172299 Query 48375 TTAAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATAC 48434 | ||| | | | || || ||| ||| | | || || || | | ||||||||| Sbjct 172300 TGAAACAAACAATTCTTCTCAACCAAATCGCTTATATATGTTTCAAGAAGGAGACTATAC 172359 Query 48435 ATTTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTG 48492 ||||| || || ||||| ||||| || || || || | ||| ||| | |||||||| Sbjct 172360 ATTTCAGAATGTATATTCTCAATCGCGATTTGGAACCTGTAGAAAGCACGCGCTTCTG 172417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694606913693280