Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq55 242 5e-59 seq5 147 3e-30 seq6 138 2e-27 seq104 122 1e-22 >seq55 Length=606834 Score = 242 bits (268), Expect = 5e-59 Identities = 596/898 (66%), Gaps = 8/898 (1%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || ||||| || || || ||||| ||||| ||||| || |||| | || || Sbjct 250544 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTCTTCCCTTGAAGAGAAATCAA 250485 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||||| ||||| ||||||||||| ||| | | || | || | Sbjct 250484 CTCCATCCAATCAAAAGGATTCTGAACATTATAAACTTTCCCACAACCAAGCTCACCCAA 250425 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || ||||| |||||||| || |||||| |||||| |||| |||||| || | | Sbjct 250424 CAACCTATCGGCAACGAACTCAATATACTGGCTCATCAAATCACCATTCATCCCGACCAA 250365 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | ||| || || || || |||||| ||||| || ||||| | || Sbjct 250364 CGCGCACGGAAGCGCGTCACAAACAAACTCCCTCTCAATCTCAACCGCATCACTCACAAT 250305 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | | ||| |||||||| || || | |||| || | | | ||||| ||||| Sbjct 250304 CTTCTTCACTCGCTCCTCACTCAGTTTATTCCTCAATAGTGAATAAAGCAAACAAGCAAA 250245 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 |||||||||||| ||||| || | ||| | ||||| ||||| || | |||||||| Sbjct 250244 ATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 250185 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || ||||| ||||| |||||||| || || |||| ||||| || || || ||||| Sbjct 250184 TAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTACCAGAGAAAAAAATACCTTC 250125 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCA-CCTTT 46816 || || || || || | ||| || | ||| | ||| | ||||| | || || Sbjct 250124 AACGCAAGCAAAAGCAACGATTCTTTCAGC-AAAC--GAATC-CGACGAATCGATCCATT 250069 Query 46817 ---GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 46873 ||||||||| || || || | |||||| || || || ||||||| ||| | | Sbjct 250068 TCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGCATGAAACAAAC 250009 Query 46874 AGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 || || ||| | ||| | | ||| || || | | |||||||||||||| |||| Sbjct 250008 GATTCTTCTCAACCGAATCGCTTATATACGTTTCAAGAAGGAGACTATACATTTCAGAAT 249949 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993 | || || ||||| || || ||||| ||||||||| | || || | || || || | Sbjct 249948 GTATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCGCCTCTGAAACTTGAACTT 249889 Query 46994 CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 || | |||| | ||| | |||||| || || || || || || ||||||| Sbjct 249888 CTTTCATGAATCTTCCAGCAAGATTCTCTAAAACGATGCCGTCGGATGCGGCGAAAAATG 249829 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATAT 47113 | | || || | ||| | | ||| || ||| | || ||||| | | | || Sbjct 249828 CAAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAATTGTTCCAATGTTGAAGAT 249769 Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 ||| ||||| ||| |||||||| || ||||||||||| || || |||||||| ||||| | Sbjct 249768 CTTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACATTT 249709 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAG 47231 ||| || | | | |||| || || || ||| ||| | | ||| ||| ||||| Sbjct 249708 CCCAAATTTTAGGGTATTCAATTGGGAACATACAAAAACGGTCTGGGTTTGGAGCAAG 249651 Score = 242 bits (268), Expect = 5e-59 Identities = 596/898 (66%), Gaps = 8/898 (1%) Strand=Plus/Minus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 ||| || ||||| || || || ||||| ||||| ||||| || |||| | || || Sbjct 259227 TTTCTGATATTCCCCAACGCGCTTCTCAAAAAAGTTAGTCTTCCCTTGAAGAGAAATCAA 259168 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 ||||| ||||||| ||||| ||||||||||| ||| | | || | || | Sbjct 259167 CTCCATCCAATCAAAAGGATTCTGAACATTATAAACTTTCCCACAACCAAGCTCACCCAA 259108 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGAG 46517 || ||||| |||||||| || |||||| |||||| |||| |||||| || | | Sbjct 259107 CAACCTATCGGCAACGAACTCAATATACTGGCTCATCAAATCACCATTCATCCCGACCAA 259048 Query 46518 TTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTAT 46577 | ||| || || || || |||||| ||||| || ||||| | || Sbjct 259047 CGCGCACGGAAGCGCGTCACAAACAAACTCCCTCTCAATCTCAACCGCATCACTCACAAT 258988 Query 46578 CGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCAAA 46637 | | ||| |||||||| || || | |||| || | | | ||||| ||||| Sbjct 258987 CTTCTTCACTCGCTCCTCACTCAGTTTATTCCTCAATAGTGAATAAAGCAAACAAGCAAA 258928 Query 46638 ATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCAT 46697 |||||||||||| ||||| || | ||| | ||||| ||||| || | |||||||| Sbjct 258927 ATCACAATGAAGTCCTTCGTCACGCGAAATAAGCTCGTTTGAAAAAGTTAAACCAGGCAT 258868 Query 46698 TAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTC 46757 || ||||| ||||| |||||||| || || |||| ||||| || || || ||||| Sbjct 258867 TAAACCACGTTTTTTAAGCCAAAAAATTGCACAGAAACTACCAGAGAAAAAAATACCTTC 258808 Query 46758 TACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATGAATCCA-CCTTT 46816 || || || || || | ||| || | ||| | ||| | ||||| | || || Sbjct 258807 AACGCAAGCAAAAGCAACGATTCTTTCAGC-AAAC--GAATC-CGACGAATCGATCCATT 258752 Query 46817 ---GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 46873 ||||||||| || || || | |||||| || || || ||||||| ||| | | Sbjct 258751 TCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAGCATGAAACAAAC 258692 Query 46874 AGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 || || ||| | ||| | | ||| || || | | |||||||||||||| |||| Sbjct 258691 GATTCTTCTCAACCGAATCGCTTATATACGTTTCAAGAAGGAGACTATACATTTCAGAAT 258632 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993 | || || ||||| || || ||||| ||||||||| | || || | || || || | Sbjct 258631 GTATATTCTCAATCGCGATTTGAAAACCGTAAAAAGCACGCGCCTCTGAAACTTGAACTT 258572 Query 46994 CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 || | |||| | ||| | |||||| || || || || || || ||||||| Sbjct 258571 CTTTCATGAATCTTCCAGCAAGATTCTCTAAAACGATGCCGTCGGATGCGGCGAAAAATG 258512 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATAT 47113 | | || || | ||| | | ||| || ||| | || ||||| | | | || Sbjct 258511 CAAGAACGTGGGATACAAAGTGTCGTTCGCCGTCAGTTAAATTGTTCCAATGTTGAAGAT 258452 Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 ||| ||||| ||| |||||||| || ||||||||||| || || |||||||| ||||| | Sbjct 258451 CTTGTGATAAATCAACTTCTTCGGCGGTCCAGAATGAGGCTTCGGCTTTTTTGTACATTT 258392 Query 47174 TCCATATATCACGATATTGGATCGGAAAAATAACAAATCTATTTGGATTTTTTGCAAG 47231 ||| || | | | |||| || || || ||| ||| | | ||| ||| ||||| Sbjct 258391 CCCAAATTTTAGGGTATTCAATTGGGAACATACAAAAACGGTCTGGGTTTGGAGCAAG 258334 >seq5 Length=48169137 Score = 147 bits (162), Expect = 3e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | |||||||| |||| | || | || |||||||| ||| || Sbjct 35185793 CCACCCTGATCAACATAGCGGGCAGTGTCATTAAACACACGCAGCATTGGAACAATACCA 35185734 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || |||||||||||| ||| ||||| ||| ||||| || ||| |||||| Sbjct 35185733 TTAGACGTCCCATTTGTTCCACGAATGTAACTACCATGGGCACGTATGTTATGAATAGAA 35185674 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||||||||| |||| || | |||||| |||||||| ||||| || Sbjct 35185673 ACACCAATTCCTCCTGCAGATTTACTAATAATAGCACACTCCTTCAATGTATCATAAATC 35185614 Query 76934 CCCTCTATACTATCATCCATCATG 76957 ||||| ||||||||||| ||||| Sbjct 35185613 CCCTCAATACTATCATCTTTCATG 35185590 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || || || || |||||||||||| ||| ||| | || | Sbjct 35185462 GTCCCAGCATTGAAAAGAGTTGGCGAAGCGTGAGTGAACCATCTTTGAGACATTAAGTGA 35185403 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| || | | | ||||||||| | ||||||||| |||| || | ||||||| Sbjct 35185402 TAAGTTTTAACAGCAGATTCTATATCATCCTTATGAATTCCAACAGAAACCCTCATCAAC 35185343 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCAA 77172 ||||||||||| | ||| ||| ||| | || | |||||||| || ||| | || | Sbjct 35185342 ATATGCTGAGGCCTTTCCACA-ACTTTTCCTTGAACTTTCAACAGATAAGATCTCTCTAG 35185284 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || ||||| || | || ||| || || || ||||| || Sbjct 35185283 GGTTTTGAATCCAAAGTAATCATAGTCAAAATCCCTATCATAAATTAT 35185236 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 ||||||||||| || | || | | ||| |||| || |||||| ||| |||||||| Sbjct 35186277 TCTCTTTCATACTGAATGTACAGCTTCTCATATTCTTCACCCCAACAATCTGCCAAACCA 35186218 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || |||||| || || | ||| ||||| || |||| || ||| | || ||||||| Sbjct 35186217 GGTGCTTCATTGGGGCAAAACAAAGACCATTCCCCATTGCTCTGAACTCTTTCCATAAAG 35186158 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||| | ||| || ||| ||||| |||||| Sbjct 35186157 AGATCAGGCACCCAAAGGGCATAAAATAAATCTCG 35186123 >seq6 Length=59463898 Score = 138 bits (152), Expect = 2e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | |||||||| |||| | || | | |||||||| ||| || Sbjct 7426928 CCACCCTGATCAACATAGCGGGCAGTGTCATTAAACACACGGAGCATTGGAACAATACCA 7426869 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| ||||||||||| ||| ||||| ||| |||||| || ||| || ||| Sbjct 7426868 TTAGATGTCCCATTTGTTCCTCGAATGTAACTACCATGTGCACGTATGTTATGAACAGAA 7426809 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || ||||||||||| |||| || | |||||| ||||| || ||||| || Sbjct 7426808 ACACCAATTCCTCCTGCAGATTTACTAATAACAGCACACTCCTTCAAAGTATCATAAATC 7426749 Query 76934 CCCTCTATACTATCATCCATCATG 76957 ||||| ||||||||||| ||||| Sbjct 7426748 CCCTCAATACTATCATCTTTCATG 7426725 Score = 107 bits (118), Expect = 3e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| |||||||||||||| | | ||| | || | Sbjct 7426602 GTCCCAGCATTGAAAAGAGTTGGAGAAGCATGAGTGAACCACCTCTGAGACATTAAGTGA 7426543 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||| || | | | ||||||||| | ||||||||| |||| || | ||||||| Sbjct 7426542 TAAGTTTTAACAGCAGATTCTATATCATCCTTATGAATTCCAACAGAAACCCTCATCAAC 7426483 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCAA 77172 ||||||||||| | ||||||| ||| | || | |||||||| || ||| | || | Sbjct 7426482 ATATGCTGAGGCCTTTCTACA-ACTTTTCCTTCAACTTTCAACAGATAAGATCTCTCGAG 7426424 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| || ||||| || | || ||| || || || ||||| || Sbjct 7426423 GGTTTTGAATCCAAAGTAATCATAATCAAAATCCCTATCATAAATTAT 7426376 Score = 95.1 bits (104), Expect = 2e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 ||||| ||||| || || || | | ||| |||| || |||||| ||| |||||||| Sbjct 7427394 TCTCTCTCATACTGAGTGTACAGCTTCTCATATTCTTCACCCCAACAATCTGCCAAACCA 7427335 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 || |||||| || || | ||| ||||| || |||| | |||| | || ||||||| Sbjct 7427334 GGCGCTTCATTAGGGCAAAACAAAGACCATTCCCCATTGCTCCTAACTCTTTCCATAAAG 7427275 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||| | ||| || ||| ||||| |||||| Sbjct 7427274 AGATCAGGCACCCAAAGGGCATAAAATAAATCTCG 7427240 >seq104 Length=244920 Score = 122 bits (134), Expect = 1e-22 Identities = 238/347 (69%), Gaps = 11/347 (3%) Strand=Plus/Plus Query 46627 AAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAA-TTCGTTAGAAAATGT 46685 ||||| || |||||||||||||| ||||| || | || || ||| ||||| ||||| || Sbjct 172064 AAACAAGCGAAATCACAATGAAGTCCTTCGTCAC-ACAAAATAAGCTCGTTTGAAAAAGT 172122 Query 46686 GAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAA 46745 | ||| |||||| ||||| ||||| ||||||||||| || ||| | ||| || Sbjct 172123 TAAACCATGCATTAAACCACGTTTTTTAAGCCAAAATATCGCACATAAACTACTAGAGAA 172182 Query 46746 GAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG 46805 || || ||||| || || || || || | ||| || ||| || | | Sbjct 172183 AAAAATACCTTCAACGCAAGCAAAAGCAACGATTCTTTC-----AACAATCAAATCGACG 172237 Query 46806 AATCCA-CCTTT---GAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAG 46861 |||| | || || ||||||||| || || || | |||||| || || || |||| Sbjct 172238 AATCGATCCATTTCAAAGCCCAATCCGCTTTCTTACGAATACAAGGAATCGTCTCAATAG 172297 Query 46862 CATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTAT 46921 ||| ||| | | | || || ||| | ||| | | |||||| || | | ||||||| Sbjct 172298 CATGAAACAAACAATTCTTCTCAACCAAATCGCTTATATATGTTTCAAGAAGGAGACTAT 172357 Query 46922 ACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAA 46968 ||||||| ||||| || || ||||| || || || || | ||| ||| Sbjct 172358 ACATTTCAGAATGTATATTCTCAATCGCGATTTGGAACCTGTAGAAA 172404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712870886456640