Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cicer_20arietinum_20[refseq_20GCF_5F000331145.1_202013-01-16] 7,127 sequences; 530,893,862 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6 138 1e-27 seq2 122 8e-23 seq5 91.5 1e-13 >seq6 Length=59463898 Score = 138 bits (152), Expect = 1e-27 Identities = 172/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||| ||||| ||||| | || || || || || |||||||| ||||| ||||||| Sbjct 9515635 CGCCACCGCGGAGACGGAGGACAAGGTGGAGAGTTGATTCCTTCTGGATGTTGTAGTCGG 9515694 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 ||| ||||| |||| || | |||||| |||||||| || || ||||||||||| | | Sbjct 9515695 CGAGAGTGCGGCCGTCTTCCAACTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCTGGTG 9515754 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCC 41812 ||| | ||||||| | || | ||||||| || | | | |||||| |||||| Sbjct 9515755 GAATTCCTTCCTTGT-CTTGGATCTTTGCTTTGACATTGTCGATTGTGTCGGAAGACTCC 9515813 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||||| | || ||||| |||||||| || || || ||||| |||||||| || Sbjct 9515814 ACCTCGAGGGTGATCGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 9515866 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| ||||| || || || || ||||||||||||||| ||||| | Sbjct 17162355 CCACCACGAAGACGCAACACGAGGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCT 17162296 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| | | || || | ||||| || || || |||| | || || || | || Sbjct 17162295 AGGGTCCTTCCATCCTCCAATTGCTTCCCAGCAAAGATCAACCTTTGCTGATCTGGTGGG 17162236 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGAC--TCCA 41813 | | |||||||| | ||| ||||||| | || | || | ||| || || |||| Sbjct 17162235 ATTCCCTCCTTGT-CTTGAATTTTTGCCTTTACATTGTCA-ATTGTGTCTGAACTTTCCA 17162178 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| ||||| || || || |||| |||||||| || |||||||| Sbjct 17162177 CCTCCAAAGTTATGGTCTTTCCTGTCAAAGTCTTTACAAAGATCTGCAT 17162129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || | ||||| ||| || ||| || |||||||| || || || | Sbjct 17161672 GCCACCACGGAGTCGGAGCACCAAATGAAGGGTGGATTCTTTCTGAATATTGTAATCTGC 17161613 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || || | || || ||||| ||||| || || || || | ||||||||| | || Sbjct 17161612 TAAAGTTCGGCCATCCTCAAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGG 17161553 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACT 41810 || ||||||||||||| ||| | || || | || | | | ||| || ||| | Sbjct 17161552 AATGCTCTCCTTGTCC-TGAATCTTGGCCTTGACATTGTCAATAGTATCAGAGCT---TT 17161497 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| | || ||||| || || || || ||||| ||||| || ||||| Sbjct 17161496 CCACCTCAAGGGTGATCGTCTTTCCAGTGAGAGTCTTCACGAAGATTTGCAT 17161445 Score = 82.4 bits (90), Expect = 7e-11 Identities = 159/231 (69%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| ||| || ||| ||| ||||||||||| || || | Sbjct 17146113 CCACCACGGAGACGAAGCACCAAATGGAGGGTGGACTCTTTCTGAATGTTGTAATCTGCC 17146054 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | || || | || || ||||| ||||| || || || || | ||||||||| | ||| Sbjct 17146053 AAAGTTCGGCCATCTTCAAGCTGTTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGTGGA 17145994 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTC---GCTCGACTC 41811 | || ||| |||||| ||| | || || | || | | | || || ||| ||| Sbjct 17145993 ATGCCCTCTTTGTCC-TGAATCTTAGCCTTTACATTGTCGATGGTATCAGAGCT---CTC 17145938 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| | || || || || || || || ||||| || || || ||||| Sbjct 17145937 CACCTCAAGAGTGATGGTCTTTCCGGTGAGAGTCTTCACAAATATTTGCAT 17145887 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 || || || || ||| |||||||||||||| || |||| | ||| || | || || Sbjct 17146779 ACAAGGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCGGCCAAGGTTCGGCCATCTTCA 17146720 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 |||||||| || || || |||| | || ||||| | ||| | | |||||||||| || Sbjct 17146719 AGCTGCTTTCCAGCAAAAATCAACCTTTGCTGGTCTGGGGGGATACCCTCCTTGTCC-TG 17146661 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGA---CTCCACCTCCACCGTTATCGTT 41830 | || || | || | || | ||| || || ||| ||||||| || || || Sbjct 17146660 TATCTTAGCCTTCACATTGTCA-ATTGTGTCT-GAGCTCTCAACCTCCAAAGTAATTGTC 17146603 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| |||||||||||||| Sbjct 17146602 TTGCCTGTAAGTGTCTTCACGAAAATCTGCAT 17146571 >seq2 Length=36634854 Score = 122 bits (134), Expect = 8e-23 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || || || || || |||||||| ||||| ||||||| | Sbjct 8273583 CCACCACGGAGACGGAGAACAAGGTGAAGAGTTGATTCCTTCTGGATGTTGTAGTCGGCG 8273524 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| ||||| || || |||||||| || || || |||||||||| ||| Sbjct 8273523 AGAGTGCGGCCGTCTTCGAGTTGTTTTCCGGCGAAGATGAGTCGTTGTTGGTCCGGTGGA 8273464 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| |||||| |||| ||| | | | ||||| || || || Sbjct 8273463 ATCCCTTCCTTGTCTTGGATTTTG-GCTTTGACGTTGTCGATTGTGTCAGAGGATTCAAC 8273405 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | || || ||||||||||| || || || ||||| |||||||| || Sbjct 8273404 CTCGAGGGTGATTGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 8273354 >seq5 Length=48169137 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 41672 TCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 41731 ||||||||||||||||| || | || || | | || || |||||||| || || ||| Sbjct 36920928 TCCTTCTGAATGTTATAATCAGCAAGAGTTCTTCCATCCTCAAGCTGCTTACCAGCAAAT 36920869 Query 41732 ATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGAC 41791 |||| |||||||| |||| |||| | ||| || ||| ||| | || |||| ||| Sbjct 36920868 ATCAAACGCTGTTGATCCGGTGGAATTCCCTCTTTATCC-TGAATCTTCGCTTTCACGTT 36920810 Query 41792 GAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 | | ||| || ||| ||||||| || || ||||| || || || || || || Sbjct 36920809 ATCAATAGTATCAGAACTCTCAACCTCCAAGGTGATGGTTTTTCCGGTTAGGGTTTTGAC 36920750 Query 41851 GAAAATCTGCAT 41862 |||||||||||| Sbjct 36920749 GAAAATCTGCAT 36920738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462262814492400