Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq29839 150 2e-31 >seq29839 Length=13537 Score = 150 bits (166), Expect = 2e-31 Identities = 553/853 (65%), Gaps = 25/853 (3%) Strand=Plus/Minus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 || || |||| || | ||| || ||||| ||||| || |||| || || || ||| Sbjct 5141 TGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAACTCC 5082 Query 15974 ATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCA--GTTCCGTAACTA 16031 || ||||||| ||||| | | | | || || || |||| | ||| ||| | Sbjct 5081 ATCCAATCAAACGGATTTTGAACATTATAGATTTTGCCATATCCCAAGGCTCC--AACCA 5024 Query 16032 ATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTC 16091 | |||||||| ||||||||||| ||||| | ||| ||||| | ||| ||||| | ||| Sbjct 5023 ACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAAGAG 4964 Query 16092 GTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATAT 16151 ||||| | ||| | | ||||| |||||| |||| || ||| | | || | Sbjct 4963 CCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAATCT 4904 Query 16152 CGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGT 16211 | | |||| ||| | | | | | | | | ||| | ||| || || | Sbjct 4903 CCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAAT 4844 Query 16212 CGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTT 16271 | ||||| || ||||| |||| || | ||||| || || ||||| || |||||| Sbjct 4843 CACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCATTA 4784 Query 16272 TTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAAGAATATACCCTCA 16330 || ||||| || |||||||| || | |||| || || || ||||| || |||||| Sbjct 4783 ACCCACGTTTTTTCAACCAGAAAATGG-AGCAGAAACTACCTGAGAAGAAAATTCCCTCA 4725 Query 16331 ACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTC 16390 ||| | ||||| || | | || || ||| ||| || | || |||||| || Sbjct 4724 ACACAGGCAAACGCCAAAATACGCTCGGCGAACGAT---TCCGTGCTATCAATCCACTTT 4668 Query 16391 TGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAAT--- 16447 |||| || || || | || | ||| | ||||| || || ||||| Sbjct 4667 AACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACCGA 4608 Query 16448 TTCT-CTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGA 16506 |||| || || ||||| | | ||||| || |||| || | ||||||||| || || Sbjct 4607 TTCTTCTCGTT--TGAATTTT--TGATATAGGTTTCAAGGAGAAGACTGTACATCTCGGA 4552 Query 16507 GTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTAC 16566 || |||||||| ||||| || || ||||||||||| || ||| || || | ||| || Sbjct 4551 ATGGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGGAC 4492 Query 16567 TTC---CACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAA 16623 ||| || | || ||| | || || ||||| ||||| || ||| ||||| || Sbjct 4491 TTCTTTCATG---AACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAA 4435 Query 16624 AAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATG-TAAGAATATGCCAATCTT 16682 || || | | || | ||||||| ||| |||||||| | |||| || | ||| | Sbjct 4434 GAAGGCAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTAAGGAT-TCCCAGTGGC 4376 Query 16683 TTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTAT 16742 | |||| || | ||| ||||| || | ||||| ||| || | || || || | Sbjct 4375 GAAGGTCTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGT 4316 Query 16743 ACATTTTCCAAAT 16755 |||| | ||| || Sbjct 4315 ACATCTCCCAGAT 4303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511157107415360