Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq29839 251 8e-62 seq9269 98.7 1e-15 >seq29839 Length=13537 Score = 251 bits (278), Expect = 8e-62 Identities = 585/875 (67%), Gaps = 18/875 (2%) Strand=Plus/Minus Query 23844 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 23903 || || |||||||| || | ||| || || |||||||| || || | || || || Sbjct 5144 TTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 5085 Query 23904 TCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATC 23963 ||||| |||| | ||||| ||||||||||||| | | ||||||| | || | Sbjct 5084 TCCATCCAATCAAACGGATTTTGAACATTATAGATTTTGCCATATCCCAAGGCTCCAACC 5025 Query 23964 AATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 24023 || |||||||| ||||| || || ||| |||||| || | ||||||||| | ||| Sbjct 5024 AACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAAGA 4965 Query 24024 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 24083 || || | ||| || | |||||| ||| ||| || || ||||||| ||| Sbjct 4964 GCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAATC 4905 Query 24084 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 24143 || ||| || |||||| | | | || | | ||| |||||| || ||| Sbjct 4904 TCCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAA 4845 Query 24144 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 24203 || || || || || || |||| ||| || ||||| || ||||| | ||| |||||| Sbjct 4844 TCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCATT 4785 Query 24204 AGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTC 24262 | ||||| ||||| | ||| || ||||| ||| || || || ||||||||||| || Sbjct 4784 AACCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAACTACCTGAGAAGAAAATTCCCTC 4726 Query 24263 TACTGCCGCAAAGGCAATAAGTCTTTCTCCATAAC----CGGCGCTGTCATGTATCCACT 24318 || ||||| || | || | || | ||| | | ||| ||| ||||||| Sbjct 4725 AACACAGGCAAACGCCAAAATACGCTCGGC-GAACGATTCCGTGCTATCA---ATCCACT 4670 Query 24319 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 24378 || |||||||| |||||||| || ||||| || | || || |||||| || | Sbjct 4669 TTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACC 4610 Query 24379 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 24438 || || || || || ||| | ||| || |||| | |||||| ||||| || |||| Sbjct 4609 GATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATCTCGGAAT 4550 Query 24439 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 24498 | ||||| || ||||| ||||| ||||| |||||| |||||| || | || || |||| Sbjct 4549 GGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGGACTT 4490 Query 24499 CTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 24558 || | || ||| | || | ||| || || || || ||| || || || || | Sbjct 4489 CTTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAGAAGG 4430 Query 24559 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG---- 24614 | | ||||| | || |||| ||| ||||| | |||| ||||| || || Sbjct 4429 CAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTA-AGGATTCC---CAGTGGCGA 4374 Query 24615 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 24674 | |||| || | ||| ||||| || | ||||| || || || || || || || ||| Sbjct 4373 AGGTCTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTAC 4314 Query 24675 ATATTCCAGATGTCATGATATTGAATTGGAAAAAT 24709 || | |||||| | | |||| |||||||| || || Sbjct 4313 ATCTCCCAGATTTGAGGATAATGAATTGGGAACAT 4279 >seq9269 Length=8543 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 54185 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 54244 ||||| ||||| | |||| ||| || | ||| |||| | || ||| || | ||| ||| Sbjct 7940 CCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCCA 7881 Query 54245 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 54304 || |||| ||||| || || ||||| || || ||||||| ||||| || || Sbjct 7880 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCCATGGCACGGATATTGTGGATGGAA 7821 Query 54305 AGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 54364 | ||| || || || || || || | || ||| |||||| |||||||| || Sbjct 7820 ACACCAATACCACCAGCTGACTTGCTAATAACAGCACATTCTTTTAAGGTATCATATATT 7761 Query 54365 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 54406 || ||||||||||||||| ||||| | || ||||||||| Sbjct 7760 CCTTCTATACTATCATCCTTCATGCATACAAGGAAACAGCTA 7719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593422898663040