Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq21318 114 1e-20 seq18711 87.8 2e-12 seq3045 82.4 7e-11 >seq21318 Length=12341 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||||| ||||| | || |||||||| || ||| ||| |||| | || Sbjct 5428 ATGCAAATCTTCATAAAAACCCTTACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 5369 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | ||| ||| ||| |||||||| || | || || ||| Sbjct 5368 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 5309 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || ||||| || ||| | ||| | |||||||||||| Sbjct 5308 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACGCTTGCCGATTACAAT 5249 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || |||||||||||||| || || Sbjct 5248 ATCCAGAAGGAATCTACACTCCA 5226 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| | || |||||||||||||| ||||| || ||| ||| | | Sbjct 4517 AATGCAGATTTTCGTGAAGACATTGACGGGCAAGACCATCACTCTGGAAGTAGAAAGCTC 4458 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | ||| ||| ||| || || || || | || || || Sbjct 4457 CGACACTATCGACAATGTGAAGGCAAAGATTCAAGACAAGGAGGGAATCCCACCTGACCA 4398 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || |||||||| ||||||||||| |||||| || |||| | || |||||||| Sbjct 4397 GCAGAGGCTGATCTTTGCAGGCAAACAACTTGAAGATGGCAGAACTTTAGCTGATTACAA 4338 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 || || |||||||| ||||| || ||||| | ||| | || || ||| Sbjct 4337 CATCCAAAAGGAATCAACTCTCCATTTGGTGCTTCGACTGCGTGGGGGG 4289 >seq18711 Length=80062 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| ||| | ||||| | || || |||||||| ||| || |||| | | Sbjct 40149 AATGCAAATCTTCGTGAAAACCCTCACCGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 40208 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || | ||| || || |||||||| ||| | ||| || || Sbjct 40209 CGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATCCCCCCGGACCA 40268 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || ||||| ||||| || || |||||||| |||||| | ||| |||| || ||||| Sbjct 40269 GCAGAGACTAATCTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 40328 Query 29141 TATTCAGAAGGAATCTAC 29158 |||||||||||||| || Sbjct 40329 CATTCAGAAGGAATCAAC 40346 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || ||||||| | ||||| || || ||||| || ||| | | Sbjct 40377 AATGCAAATTTTTGTCAAAACGCTTACGGGGAAGACTATTACACTAGAGGTTGAAAGCTC 40436 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 ||| || | | | || | || || ||| || ||||||||| | ||| || || Sbjct 40437 AGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATTCCCCCGGACCA 40496 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGATTAC 29138 ||||| | ||||| || ||||| || || |||||| | | |||| ||||| ||| Sbjct 40497 GCAAAGGTTGATCTTCGCAGGCAAGCAGCTCGAAGATGGACGGACACTA--GCCGACTAC 40554 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTG 29171 |||||||| ||||| || ||||||||| | ||| Sbjct 40555 AATATTCAAAAGGAGTCCACTCTTCACCTTGTG 40587 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||| ||||| || | || || || || || ||| |||| Sbjct 40699 GATAAAGAAGGGATCCCACCAGACCAACAGAGGTTAATTTTCGCTGGGAAGCAATTGGAG 40758 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| || ||| | ||||| || |||||||| |||||||| ||||| ||| ||||| | Sbjct 40759 GATGGCAGGACTCTAGCCGACTATAATATTCAAAAGGAATCGACTCTCCACTTGGTGCTG 40818 Query 29175 CGATTACGAGGAGGG 29189 || | || |||||| Sbjct 40819 CGTCTTCGTGGAGGG 40833 >seq3045 Length=115554 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | ||| ||| || || ||| | || ||||| || || || ||||| Sbjct 11629 GATAAGGAAGGTATCCCCCCAGACCAGCAGAGATTGATATTTGCCGGAAAGCAGTTGGAA 11570 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| ||| | ||||||||||| |||||||||||||| |||||||| Sbjct 11569 GATGGGCGAACCCTTGCCGATTACAACATTCAGAAGGAATCCACTCTTCA 11520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428125891554440