Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq21318 107 2e-18 seq3045 95.1 1e-14 seq18711 91.5 1e-13 >seq21318 Length=12341 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || ||| | || |||||||||||||| ||||| || ||| ||| | | Sbjct 4517 AATGCAGATTTTCGTGAAGACATTGACGGGCAAGACCATCACTCTGGAAGTAGAAAGCTC 4458 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || | ||| ||| ||| || || || || | || || || Sbjct 4457 CGACACTATCGACAATGTGAAGGCAAAGATTCAAGACAAGGAGGGAATCCCACCTGACCA 4398 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || || || |||||||| ||||||||| | |||||| || |||| | || |||||||| Sbjct 4397 GCAGAGGCTGATCTTTGCAGGCAAACAACTTGAAGATGGCAGAACTTTAGCTGATTACAA 4338 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 || ||||||||||| ||||| || ||||| | ||| | || || ||| Sbjct 4337 CATCCAAAAGGAATCAACTCTCCATTTGGTGCTTCGACTGCGTGGGGGG 4289 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||||| ||||| | || |||||||| || ||| ||| |||| | || Sbjct 5428 ATGCAAATCTTCATAAAAACCCTTACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 5369 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | ||| ||| ||| |||||||| || | || || ||| Sbjct 5368 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 5309 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || || ||| | || ||| | ||| | |||||||||||| Sbjct 5308 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACGCTTGCCGATTACAAT 5249 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || || ||||||||||| || || Sbjct 5248 ATCCAGAAGGAATCTACACTCCA 5226 >seq3045 Length=115554 Score = 95.1 bits (104), Expect = 1e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | ||| ||| ||||| ||||| |||||||| || |||||||||||| Sbjct 11401 GACAAGGAAGGTATTCCCCCAGACCAACAGAGACTCATCTTTGCTGGGAAACAATTGGAA 11342 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| | |||| | || |||||||| || || ||||| |||||||| || Sbjct 11341 GATGGCCGAACTCTTGCAGATTACAACATCCAGAAGGAGTCTACTCTCCA 11292 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | ||| ||| || || ||| | || ||||| || || || |||||| Sbjct 11629 GATAAGGAAGGTATCCCCCCAGACCAGCAGAGATTGATATTTGCCGGAAAGCAGTTGGAA 11570 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| ||| | ||||||||||| ||||| |||||||| |||||||| Sbjct 11569 GATGGGCGAACCCTTGCCGATTACAACATTCAGAAGGAATCCACTCTTCA 11520 >seq18711 Length=80062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || ||| ||||| || | || || || || || |||||||| Sbjct 40699 GATAAAGAAGGGATCCCACCAGACCAACAGAGGTTAATTTTCGCTGGGAAGCAATTGGAG 40758 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || ||| | ||||| || ||||||||||||||||| ||||| ||| ||||| | Sbjct 40759 GATGGCAGGACTCTAGCCGACTATAATATTCAAAAGGAATCGACTCTCCACTTGGTGCTG 40818 Query 25248 CGATTACGAGGAGGG 25262 || | || |||||| Sbjct 40819 CGTCTTCGTGGAGGG 40833 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || ||||||| | ||||| || || ||||| || ||| | | Sbjct 40377 AATGCAAATTTTTGTCAAAACGCTTACGGGGAAGACTATTACACTAGAGGTTGAAAGCTC 40436 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | || |||| || ||| || ||||||||| | ||| || || Sbjct 40437 AGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATTCCCCCGGACCA 40496 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATT--CCAAAACTATGGCCGATTAC 25211 ||||| | ||||| || ||||| || | |||||| | | |||| ||||| ||| Sbjct 40497 GCAAAGGTTGATCTTCGCAGGCAAGCAGCTCGAAGATGGACGGACACTA--GCCGACTAC 40554 Query 25212 AATATTCAAAAGGAATCTACTCTTCACATGGTG 25244 |||||||||||||| || ||||||||| | ||| Sbjct 40555 AATATTCAAAAGGAGTCCACTCTTCACCTTGTG 40587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410595294926672