Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq18711 158 2e-33 seq21318 136 6e-27 >seq18711 Length=80062 Score = 158 bits (174), Expect = 2e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || |||||||| ||||| | ||| ||||| | Sbjct 39922 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTTGAAAGTTCT 39981 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| |||| |||||||| ||||||||||| || || || || || Sbjct 39982 GATACTATTGACAATGTAAAGGCCAAAATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 40041 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||||||||| || ||||| || | |||||| ||||||| | | |||||||| Sbjct 40042 CAGAGGCTTATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 40101 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || |||||||||||||| | |||||||| | |||||||| ||||| || Sbjct 40102 ATACAAAAAGAATCAACCCTACATTTGGTGCTCCGTTTACGCGGTGGAAT 40151 Score = 120 bits (132), Expect = 5e-22 Identities = 177/247 (72%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAA 124596 ||||||||| ||| | ||||| |||| || ||||| || ||| | || |||| || Sbjct 40605 AATGCAAATTTTTGTGAAGACCTTAACCGGAAAAACAATTACTTTGGAAGTTGAGAGTTC 40664 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | ||||| || || | ||| || || |||||||||||||| || ||||| || | Sbjct 40665 A-GATACTATCGACAACGTTAAAGCTAAGATACAAGATAAAGAAGGGATCCCACCAGACC 40723 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 |||| ||| | ||||| || || || ||||| |||||| | | || ||| || |||| Sbjct 40724 AACAGAGGTTAATTTTCGCTGGGAAGCAATTGGAGGATGGCAGGACTCTAGCCGACTATA 40783 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT-TAAAAAT 124775 |||||||||| ||||| ||| | || ||||| | ||| | || || || || ||| || Sbjct 40784 ATATTCAAAAGGAATCGACTCTCCACTTGGTGCTGCGTCTTCGTGGAGGGATGCAAATAT 40843 Query 124776 TCATAAA 124782 | |||| Sbjct 40844 TTGTAAA 40850 Score = 111 bits (122), Expect = 2e-19 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAA 124596 ||||||||| ||| | || || || || || || ||||| || ||||| ||||| || Sbjct 40377 AATGCAAATTTTTGTCAAAACGCTTACGGGGAAGACTATTACACTAGAGGTTGAAAGCTC 40436 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 | || ||||| ||| | ||| || |||||||| ||||||||||| || || || | Sbjct 40437 A-GACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATTCCCCCGGACC 40495 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | |||||| | || || ||||| || || | || ||| | || ||| ||| || || | Sbjct 40496 AGCAAAGGTTGATCTTCGCAGGCAAGCAGCTCGAAGATGGACGGACACTAGCCGACTACA 40555 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 |||||||||| || || ||| | || | || | ||| | || ||||| || ||| || Sbjct 40556 ATATTCAAAAGGAGTCCACTCTTCACCTTGTGCTGCGTCTTCGTGGTGGAATGCAAATTT 40615 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 |||||||||||| ||||||| ||||||| || || ||||| | ||| |||| ||| | Sbjct 40834 ATGCAAATATTTGTAAAGACCTTAACAGGAAAGACCATAACATTGGAGGTTGAGAGCTCA 40893 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || ||| || | || ||||| || || || || ||||| || || || || Sbjct 40894 -GACACTATTGACAACGTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCCGACCA 40952 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | ||||| || |||||||| || |||||| | || ||||| | ||||| || Sbjct 40953 GCAAAGGTTGATTTTCGCTGGAAAACAGTTGGAGGATGGACGTACATTGGCCGATTACAA 41012 Query 124718 TATTCAAAAAGAATCAAC 124735 |||||||| || || || Sbjct 41013 CATTCAAAAGGAGTCCAC 41030 Score = 102 bits (112), Expect = 1e-16 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | || || || || || ||||| || || ||||| | ||| Sbjct 40149 AATGCAAATCTTCGTGAAAACCCTCACCGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 40208 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || |||| | || || || ||||||||||| ||||| || || || || Sbjct 40209 CGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATCCCCCCGGACCA 40268 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || || || || || || || |||||| | || ||| | || || || | || || || Sbjct 40269 GCAGAGACTAATCTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 40328 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| || |||||||| |||||||| || | ||| | || ||||| || ||| || Sbjct 40329 CATTCAGAAGGAATCAACATTGCATTTAGTGCTCCGTCTTCGTGGTGGAATGCAAATTT 40387 >seq21318 Length=12341 Score = 136 bits (150), Expect = 6e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||||||| | ||||| || || |||||||| || ||| | ||| | ||| | Sbjct 5200 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 5141 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| | || ||||| ||||| || || ||||| || ||||||||| Sbjct 5140 GATACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCTCCTGATCAA 5081 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || || |||||||| || || || | ||||| ||||||| | | || || ||| Sbjct 5080 CAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGACGGTCGAACTCTTGCTGACTACAAT 5021 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || ||||||||||| | || | || || ||||| Sbjct 5020 ATCCAGAAGGAATCTACCCTGCATTTGGTTCTTCGGCTTCGTGGGGGTAT 4971 Score = 123 bits (136), Expect = 4e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 |||||||| || ||||| || || || |||||||| || || | ||| | ||| || | Sbjct 5428 ATGCAAATCTTCATAAAAACCCTTACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 5369 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || |||||| ||| |||| || |||||||||||||| || || ||||| || || Sbjct 5368 -GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCA 5310 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| |||||||| ||||| || || ||| | |||||| | ||||| | | ||||| || Sbjct 5309 ACAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACGCTTGCCGATTACAA 5250 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGT 124747 ||| || || ||||| || | ||||| || Sbjct 5249 TATCCAGAAGGAATCTACACTCCATTTAGT 5220 Score = 122 bits (134), Expect = 1e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || ||| | || || | || |||||||| || || | || | || ||| | Sbjct 4972 ATGCAGATTTTTGTGAAAACCTTGACTGGCAAAACAATCACCTTGGAAGTGGAGAGCTCA 4913 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| |||| | ||| || || |||||||| || || || |||||||| || Sbjct 4912 -GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGCATTCCACCTGACCA 4854 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| ||| | |||||||| || || || | || || | | || ||| ||||||||| Sbjct 4853 ACAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGACGGCAGGACTCTAGCAGATTATAA 4794 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| || ||||||||||| | || || || ||||| || Sbjct 4793 CATTCAAAAGGAATCGACGTTGCATTTGGTGCTTCGATTGCGTGGTGGAAT 4743 Score = 107 bits (118), Expect = 3e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAA-GCAAA 124597 ||||| || || | ||||| || ||||| || || || || | || ||||| || | Sbjct 4288 ATGCAGATTTTCGTGAAGACGCTGACAGGAAAGACAATCACATTGGAAGTTGAAAGCTCA 4229 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || ||||| ||| | || ||| |||||||| || || || || ||||| ||||| Sbjct 4228 -GACACAATCGACAATGTGAAGGCGAAGATTCAAGACAAGGAGGGGATTCCACCAGATCA 4170 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| || || || ||||| ||||||||||| |||||| |||| || || | || || || Sbjct 4169 ACAGAGACTGATCTTTGCTGGAAAACAATTGGAGGATGGTCGGACTTTGGCTGACTACAA 4110 Query 124718 TATTCAAAAAGAATCAAC 124735 |||||| ||||| || || Sbjct 4109 TATTCAGAAAGAGTCCAC 4092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755075930086400