Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq8166 129 5e-25 seq22339 127 2e-24 seq18711 116 3e-21 seq21318 107 2e-18 seq3045 104 2e-17 seq26478 102 7e-17 >seq8166 Length=147256 Score = 129 bits (142), Expect = 5e-25 Identities = 154/208 (74%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || ||||| || || |||||||| ||| | || || |||||| | Sbjct 120240 CAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCA 120299 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || ||| | |||||||||||||| || || ||||| ||||||||||| || Sbjct 120300 GCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAA 120359 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | ||| ||||| | |||| ||| || | ||||||||||||| || | || || | Sbjct 120360 TCTTTGCCTTAACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCC 120419 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || ||||| || || |||||||| Sbjct 120420 CGGTAAGCGTTTTCACGAAGATCTGCAT 120447 >seq22339 Length=139203 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||||| |||||||| ||||| |||||||| ||| || || || ||||||| Sbjct 90556 ACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCG 90615 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || ||||| ||| |||||||||| |||||||| || || || || || ||||| Sbjct 90616 AGTTGCTTTCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGG 90675 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| ||| || | ||||||||| | ||| | || ||| Sbjct 90676 ATCTTGGCCTTTACGTTGTCGATGGTATCAGATGACTCGACCTCAAGGGTGATGGTCTTG 90735 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||||| || || || ||||| |||||| Sbjct 90736 CCGGTCAGGGTCTTGACGAAAATTTGCATG 90765 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || |||||||||||||| | ||| | |||||| ||||| || || Sbjct 89884 GTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCT 89943 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| |||| || | |||||| || ||||| ||||| |||||||| |||||| ||| Sbjct 89944 GCGAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATTTTAGCTTTT 90003 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||||| | |||||| ||||| | ||| | || || ||||||| ||| Sbjct 90004 ACATTATCGATCGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTT 90063 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 90064 TTCACGAAGATCTGCAT 90080 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || ||||| || || || ||| | ||| || Sbjct 90099 CACCAAGTGCAAGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTTCCATCTTC 90158 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||||||| |||| | | |||||| || || || || |||||||||||| Sbjct 90159 CAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 90218 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||||| | || | |||||||| ||||| ||||| | ||| | || || Sbjct 90219 GATCTTAGCCTTAACGTTGTCAATGGTGTCCGAACTCTCAACCTCTAGGGTGATGGTCTT 90278 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || ||||||||||| Sbjct 90279 GCCGGTCAATGTCTTGACGAAAATCTGCAT 90308 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | |||||| | ||||| || ||||| || || ||||||||||| Sbjct 90308 TACCACCACGAAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAG 90367 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || || || | || || || ||| ||||||| | || || || || | Sbjct 90368 CAAGGGTACGACCGTCTTCTAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGGG 90427 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || |||||||| || ||| || || | |||| ||| || | | || | Sbjct 90428 GAATTCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCAA 90487 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| ||| | ||||| |||||||| || || || ||||||||||| Sbjct 90488 CCTCGAGGGTGATGGTTTTACCGGTCAGGGTCTTAACGAAAATCTGCAT 90536 >seq18711 Length=80062 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || |||||||| | | |||||| || | || || |||||||| ||||| |||||| Sbjct 40148 CCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 40089 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || |||||||||||| ||||||||| | || || | |||||| || ||||| Sbjct 40088 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGA 40029 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || || || || || |||||| || || | || | || || | || || ||| Sbjct 40028 ATTCCTTCTTTATCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 39969 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | ||||||||||| |||||||| || || || ||||| Sbjct 39968 TCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| |||||||||||||||||| || || || |||||| | ||| Sbjct 41037 GTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAACTG 40978 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 |||||||||| | || | | ||||| |||||||| || ||||||||||| ||||| Sbjct 40977 TTTTCCAGCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTT 40918 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | ||||| | |||||| ||||| | || | || || || || Sbjct 40917 AGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCAACCTCCAATGTTATGGTCTTTCCTGT 40858 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 | || |||||||| || ||||| Sbjct 40857 TAAGGTCTTTACAAATATTTGCAT 40834 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| || || | ||| || || || ||||||||||| || || ||| || ||| || Sbjct 40359 CACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCCGCCAAAGTCCGGCCATCTTC 40300 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || ||||| |||||| |||| || | |||||| || || || || ||||| || ||| Sbjct 40299 AAGTTGTTTACCAGCGAAGATTAGTCTCTGCTGGTCCGGGGGGATACCCTCTTTATCTTG 40240 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||| || | ||| || ||||| | ||| | ||||| Sbjct 40239 GATCTTAGCCTTCACATTATCGATGGTATCGGAGCTTTCCACCTCTAAGGTGATGGTTTT 40180 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || ||||| || || || ||||| Sbjct 40179 ACCGGTGAGGGTTTTCACGAAGATTTGCAT 40150 >seq21318 Length=12341 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || |||||||| ||||| ||||| || || ||| || |||||| | || Sbjct 4085 GTGGAGGGTGGACTCTTTCTGAATATTGTAGTCAGCCAAAGTCCGACCATCCTCCAATTG 4144 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 ||||||||| |||| || | ||| ||||| || || || |||||||||||| ||| || Sbjct 4145 TTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGTGGAATCCCCTCCTTGTCTTGAATCTT 4204 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | |||| ||||| | ||| || || || | || | || || || || Sbjct 4205 CGCCTTCACATTGTCGATTGTGTCTGAGCTTTCAACTTCCAATGTGATTGTCTTTCCTGT 4264 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || ||||||||||| Sbjct 4265 CAGCGTCTTCACGAAAATCTGCAT 4288 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCTCATAGTGCGCGTATCCT 118587 |||||| |||| || || || ||||| ||||||||||| ||| | ||| | ||| | Sbjct 4307 CACCAAATGGAGAGTTGATTCCTTTTGGATGTTGTAATCAGCT-AAAGTTCTGCCATCTT 4365 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | || ||||| || || |||| || | |||||| || || || || |||||||||||| Sbjct 4366 CAAGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTT 4425 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 ||| ||| || || | |||| ||||| | ||| || || || | || | || | Sbjct 4426 GAATCTTTGCCTTCACATTGTCGATAGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCT 4485 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || || || ||||||||||| Sbjct 4486 TGCCCGTCAATGTCTTCACGAAAATCTGCAT 4516 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATC-GCT 118570 || || || |||| | |||||| || | || || || ||||||||||| ||||| ||| Sbjct 4746 CCACCACGCAATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCTGCT 4805 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| | || || ||||| || ||||| | || | | ||| || || || || Sbjct 4806 -AGAGTCCTGCCGTCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGG 4864 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 ||||||||||| ||| || || ||| || | || | || || | |||||| || Sbjct 4865 AATGCCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTCCAC 4924 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | ||| | |||||||| |||| ||||| |||||||||||||| Sbjct 4925 TTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 >seq3045 Length=115554 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || ||||| || ||||||||||| || | ||| | |||||| ||||| ||||| Sbjct 11070 GTTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCAAGCTGCTTTCCG 11129 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || || || ||||| ||||| || |||||| ||| Sbjct 11130 GCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGAATTTTCGCCTTA 11189 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | ||||||||||| | ||| | ||||| || |||| ||| Sbjct 11190 ACATTGTCGATGGTATCGGAACTCTCGACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTC 11249 Query 118722 TTTACAAAAATCTGCAT 118738 || || || |||||||| Sbjct 11250 TTAACGAAGATCTGCAT 11266 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | | ||| || | |||| |||||||| || || ||||||||||| Sbjct 11266 TACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCTG 11325 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||| || | ||||| ||||| ||||||| | ||| || || || | Sbjct 11326 CAAGAGTTCGGCCATCTTCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGGG 11385 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||||||| ||| || || || | || | ||||| | ||| | Sbjct 11386 GAATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAA 11445 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||| | ||| | || || ||||| |||||||| |||||||| |||||| Sbjct 11446 CCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAAATTTGCATG 11495 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 |||||||| || |||||||||||||| | || | ||| || || || |||||| Sbjct 10842 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCTAGTTGCTTTCCA 10901 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | |||||| || ||||| || ||||||||||| ||||||| || Sbjct 10902 GCAAAGATCAACCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATTTTTGCCTTC 10961 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| || || | ||||| ||||| | || | || || || ||||| || Sbjct 10962 ACATTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCCGTCAGGGTC 11021 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 11022 TTAACAAAGATCTGCAT 11038 >seq26478 Length=75715 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || || || || || || ||||| ||| | || || ||||| Sbjct 13948 CACAAGGTGGAGCGTGGATTCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCGTCCTC 13889 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||| ||| | || | ||||||||| ||||| || || ||||||||||| Sbjct 13888 AAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTG 13829 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | || | ||| || | ||||||||| |||| ||| | || || Sbjct 13828 GATCTTTGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACTTCGAGGGTAATGGTCTT 13769 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || || ||||| || || ||||||||| Sbjct 13768 ACCCGTTAGGGTTTTCACGAAGATCTGCATG 13738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433617596427616