Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq21318 107 2e-18 seq3045 105 8e-18 seq22339 100 3e-16 seq18711 98.7 1e-15 seq26478 96.9 4e-15 seq8166 87.8 2e-12 seq31175 84.2 2e-11 seq32607 82.4 9e-11 >seq21318 Length=12341 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||||||||| || ||||| || |||||||| ||||| ||||| || |||| || Sbjct 4992 ACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCAAGAGTTCGACCGTCCTCA 5051 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 |||||||||||||| || || |||| ||| || || | || | | ||||||||| | Sbjct 5052 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGAGGGATACCCTCCTTGTCTTGG 5111 Query 43095 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 43154 ||||| |||| | | | || || |||||| || | || ||||||||| Sbjct 5112 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 5171 Query 43155 CCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || ||||| ||||| |||||||| Sbjct 5172 CCAGTAAGGGTCTTCACAAATATTTGCAT 5200 Score = 93.3 bits (102), Expect = 5e-14 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 42966 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 43025 || || | |||||||||||| || ||||||||||| || ||||| || ||||||| Sbjct 4755 AATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCTGCTAGAGTCCTG 4814 Query 43026 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCC 43085 |||| || |||||||||||||| || || | | ||| ||||| | || | || |||| Sbjct 4815 CCGTCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGGAATGCCCTCC 4874 Query 43086 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACC 43142 || || ||| || ||| | | | | || || |||| ||||| || | Sbjct 4875 TTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCTGAGCTC---TCCACTTCCAAG 4931 Query 43143 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| |||||||| || | || || ||||| || ||||| Sbjct 4932 GTGATTGTTTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 Score = 91.5 bits (100), Expect = 2e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||| ||||| | ||| ||||| || ||||||||||| || || || || | || || Sbjct 5219 CACTAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCATCCTC 5278 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 || ||||||||||| || || || | ||| ||||||| || | || ||| || | | | Sbjct 5279 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT-CTT 5337 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 43149 || | |||| || | | | | ||||| ||| |||||| |||| ||||| | Sbjct 5338 GAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCT---TTCCACCTCGAGGGTGATTG 5394 Query 43150 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || || || |||| ||||||||||| Sbjct 5395 TTTTGCCAGTAAGGGTTTTTATGAAGATTTGCAT 5428 >seq3045 Length=115554 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| || |||||||| || || || || || |||| || || ||||| |||||||| Sbjct 11760 TCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 11819 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || |||||||||| || | | ||||||||| ||| || ||| | ||| Sbjct 11820 ATGAGACGTTGCTGGTCGGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTTA-CGTT 11878 Query 43113 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | || | ||||| || ||||| |||| ||||| || || || || || || || || Sbjct 11879 GTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATTGTCTTCCCGGTAAGGGTTTTGAC 11938 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 11939 GAAGATTTGCAT 11950 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| |||||||| || || || ||| | || || | |||||| || || ||| Sbjct 11532 TCCTTCTGAATGTTGTAATCGGCAAGGGTTCGCCCATCTTCCAACTGCTTTCCGGCAAAT 11591 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | || ||||||||| | || | | ||||| ||| ||| || || | | Sbjct 11592 ATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTA 11651 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| ||| ||||| || | |||||||| || || || || ||||| || Sbjct 11652 TCAATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACG 11711 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 11712 AAGATTTGCAT 11722 >seq22339 Length=139203 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||||||||| ||||||| | || || |||||||| || ||||| Sbjct 89889 CTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAA 89948 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || | ||||||||| | || | || ||||||||| ||| |||| | ||| | Sbjct 89949 GATCAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCC-TGAATTTTAGCTTTTACAT 90007 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | |||||| |||| ||||| || | |||||||| || || || | || | Sbjct 90008 TATCGATCGTGTCAGAGCTC---TCCACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTTT 90064 Query 43168 TTACAAAGATTTGCAT 43183 | || ||||| ||||| Sbjct 90065 TCACGAAGATCTGCAT 90080 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||||||| | || | || |||||| || || ||||||||||| || || || | Sbjct 90321 ACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGACC 90380 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| |||| ||||| || ||||| ||||||| || ||||| | || | | ||||| Sbjct 90381 GTCTTCTAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCTTCCTT 90440 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| ||| |||| | | | || || ||||| || |||| ||||| Sbjct 90441 GTCCTGGATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 90500 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || || || ||||| || || || ||||| Sbjct 90501 GGTTTTACCGGTCAGGGTCTTAACGAAAATCTGCAT 90536 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| || |||| || || | || || || ||||| || ||||| Sbjct 90802 TCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAA 90861 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| || ||||| || | || | | ||||||||| ||| || |||| ||| Sbjct 90862 ATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 90920 Query 43113 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || || ||| || || || | |||||||| ||||| ||||| || || || Sbjct 90921 GTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTTTTAAC 90980 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 90981 GAAGATTTGCAT 90992 >seq18711 Length=80062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | ||| ||||||||||| ||||| ||||| ||||| || |||| |||||| | Sbjct 40365 ACGGAGCACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCCGCCAAAGTCCGGCC 40306 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || || || ||||||||||| || |||| ||||||||| | || | | ||| || Sbjct 40305 ATCTTCAAGTTGTTTACCAGCGAAGATTAGTCTCTGCTGGTCCGGGGGGATACCCTCTTT 40246 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| || || | | | | || ||| |||||| || | ||||| Sbjct 40245 ATCTTGGATCTTAGCCTTCACATTATCGATGGTATCGGAGCTTTCCACCTCTAAGGTGAT 40186 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||||| || || || || || || |||||||||||| Sbjct 40185 GGTTTTACCGGTGAGGGTTTTCACGAAGATTTGCATT 40149 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||||||||| |||||||| |||| || || | || || | ||| || |||||||| Sbjct 41025 CTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAACTGTTTTCCAGCGAA 40966 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | | |||||||||| || | | |||||||||| |||||| || | ||| Sbjct 40965 AATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTCA-CGT 40907 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| || || || | || ||||| || || |||| |||| Sbjct 40906 TGTCAATAGTGTCTGAGCTC---TCAACCTCCAATGTTATGGTCTTTCCTGTTAAGGTCT 40850 Query 43168 TTACAAAGATTTGCAT 43183 ||||||| |||||||| Sbjct 40849 TTACAAATATTTGCAT 40834 Score = 82.4 bits (90), Expect = 9e-11 Identities = 153/221 (69%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||||| ||| | || | ||| |||||||||||||||||| || || || ||||| | Sbjct 40593 ACGCAGCACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGCTAGTGTCCGTCC 40534 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || || |||||||| || ||||| || | | |||||||| | || | | || || Sbjct 40533 ATCTTCGAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGGAATACCTTCTTT 40474 Query 43088 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 43143 || | ||| | || | ||||| | | | ||||| ||| ||| || || | | Sbjct 40473 GT-CTTGAATCTTAGCTTTGACATTGTCGATTGTGTCTGAGCT---TTCAACCTCTAGTG 40418 Query 43144 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 | || || || ||||| ||||| || ||||| ||||||||| Sbjct 40417 TAATAGTCTTCCCCGTAAGCGTTTTGACAAAAATTTGCATT 40377 >seq26478 Length=75715 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||| || | ||| | ||| | || | ||| ||||| || |||||||| || || Sbjct 13965 CCTCCCCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGGATATTGTAGTCGGCA 13906 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || |||| || |||||||| || ||||| || | ||||||||||||| || Sbjct 13905 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGGGGG 13846 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 43133 | | |||||||||| ||| ||| |||| | | | || || |||| || Sbjct 13845 ATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCGGAGCTC---TCG 13789 Query 43134 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| || ||||| || |||||||| || || || ||||| ||||| Sbjct 13788 ACTTCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 13739 >seq8166 Length=147256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || || || || | || || ||||||||||| ||||| Sbjct 120256 CTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAA 120315 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 ||||| ||||||||||| | ||| | | |||||||||| ||| | |||| || | Sbjct 120316 AATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCC-TGAATCTTTGCCTTAACAT 120374 Query 43111 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | || || ||| || || |||| || ||||| || || || ||||| | Sbjct 120375 TATCGATGGTATCAGAACTC---TCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTT 120431 Query 43168 TTACAAAGATTTGCATTTT 43186 | || ||||| ||||| || Sbjct 120432 TCACGAAGATCTGCATATT 120450 >seq31175 Length=13598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 |||||||| || ||||| || |||| || || | || || || ||||| || ||||| Sbjct 7477 TCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAA 7536 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 ||||| | ||||| || | || | | ||||||||| ||| || |||| ||| Sbjct 7537 ATGAGAAGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 7595 Query 43113 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | || || ||| || || || | |||||||| ||||| ||||| || || || Sbjct 7596 GTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTTTTAAC 7655 Query 43172 AAAGATTTGCATTTT 43186 ||||||||||| || Sbjct 7656 GAAGATTTGCATCTT 7670 >seq32607 Length=32985 Score = 82.4 bits (90), Expect = 9e-11 Identities = 62/73 (85%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60059 AAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTC 60118 |||||||| || || ||| ||||||||| |||| |||||||||||||||| ||||| Sbjct 10668 AAATTTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATACTT 10609 Query 60119 ACCACTATACTAC 60131 ||||||||||||| Sbjct 10608 ACCACTATACTAC 10596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571529918565440