Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq18711 105 1e-17 seq21318 100 4e-16 seq14089 95.1 2e-14 seq3045 86.0 9e-12 >seq18711 Length=80062 Score = 105 bits (116), Expect = 1e-17 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||||||||| || |||||||| ||| |||||||| | || |||| | ||| || Sbjct 40130 ACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCATCCTCG 40071 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | || |||||||| ||||| | || ||||| || |||||||||||||||||||| || Sbjct 40070 AGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCCTGA 40011 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 |||||| |||||||| || || || || |||||||| Sbjct 40010 ATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTTATTGTTTTG 39951 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || | ||||| | ||| |||||||| Sbjct 39950 CCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 102 bits (112), Expect = 1e-16 Identities = 146/211 (69%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 ||||| || | ||| ||||| ||| || |||||||| || | ||||| |||| ||| || Sbjct 40814 ACCAAGTGGAGAGTCGATTCCTTTTGA-ATATTATAGTCGGCTAGAGTCCTGCCATCCTC 40756 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || ||||| ||||| || || || || || || || || |||||||||||||| Sbjct 40755 CAATTGCTTCCCAGCGAAAATTAACCTCTGTTGGTCTGGTGGGATCCCTTCTTTATCTTG 40696 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 |||||||||||| || ||||| | || |||||||| Sbjct 40695 TATCTTAGCTTTAACGTTGTCGATAGTATCTGAACTCTCAACTTCCAAAGTAATTGTTTT 40636 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCATT 146278 || ||||| || || | || ||||||||| Sbjct 40635 TCCGGTTAAGGTCTTCACAAAAATTTGCATT 40605 >seq21318 Length=12341 Score = 100 bits (110), Expect = 4e-16 Identities = 160/238 (67%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | |||||| | || ||||| | |||||||| || ||||| ||||| | | Sbjct 5202 CCACCACGAAGTCTAAGCACTAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 5261 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||| || ||| || | ||| || |||||||| || | || || || || || ||| Sbjct 5262 AGCGTTCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 5321 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 || || ||||||||||| || ||||| ||||| || Sbjct 5322 ATGCCCTCTTTATCTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCACC 5381 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATTTTATTAGAAA 146288 || || ||||||||||| || || | ||||| ||||| |||||||| | | ||||| Sbjct 5382 TCGAGGGTGATTGTTTTGCCAGTAAGGGTTTTTATGAAGATTTGCATCTGTTAAGAAA 5439 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/210 (68%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||||| || || ||||| ||| || || |||||||||| ||||| |||| || || Sbjct 4764 ACCAAATGCAACGTCGATTCCTTTTGA-ATGTTATAATCTGCTAGAGTCCTGCCGTCTTC 4822 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || || |||||||||||||| || || || || || ||||| || || |||||||| Sbjct 4823 AAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGGAATGCCCTCCTTATCTTG 4882 Query 146188 NNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTT 146247 |||||||| || || ||||| | ||||||||||| Sbjct 4883 GATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTCCACTTCCAAGGTGATTGTTTT 4942 Query 146248 ACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || || ||||| | || || ||||| Sbjct 4943 GCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 >seq14089 Length=105206 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 || || || ||||| || || ||||| || | || ||||| || || |||||||| Sbjct 70554 GTACCTCCCCTAAGCCTCAAGACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAATCG 70613 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | ||| |||| | ||| || ||||| || ||||||||||| ||||| ||||| || ||| Sbjct 70614 GCAAGCGTTCGACCATCTTCCAATTGCTTACCAGCAAAAATTAATCTCTGCTGGTCAGGA 70673 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 70674 GGAATACCTTCCTTGTCCTG 70693 >seq3045 Length=115554 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| |||| || | || | ||| |||||||| || || || || | | Sbjct 11952 CCACCACGAAGCCTTAGGACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCA 12011 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 ||||||| || ||| || | ||| || || || || ||||| | |||||||||||| || Sbjct 12012 AGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGCTGATCCGGGGGG 12071 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| ||||| || Sbjct 12072 ATTCCTTCCTTATCCTG 12088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743152331868160