Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq26478 113 3e-20 seq8166 102 5e-17 seq22339 100 2e-16 seq31175 96.9 2e-15 seq18711 96.9 2e-15 seq3045 91.5 1e-13 >seq26478 Length=75715 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || ||| ||||| || |||||||||| || ||| |||| Sbjct 13950 AGCACAAGGTGGAGCGTGGATTCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCGTCC 13891 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || |||||||| | |||||||||||| ||| | | ||||||||| Sbjct 13890 TCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCC 13831 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | | || | ||||| ||||| || | || ||||| Sbjct 13830 TGGATCTTTGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACTTCGAGGGTAATGGTC 13771 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || || |||||||| ||||||||||| Sbjct 13770 TTACCCGTTAGGGTTTTCACGAAGATCTGCAT 13739 >seq8166 Length=147256 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || || | || |||| |||||| || |||||| Sbjct 120257 TCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAA 120316 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| || | | ||||||||| |||||| ||| | || Sbjct 120317 ATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTTGCCTTAACATTA 120376 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | ||||| || | || ||||| || ||||| || |||||||| Sbjct 120377 TCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACG 120436 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 120437 AAGATCTGCAT 120447 >seq22339 Length=139203 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || ||| || || ||||||||||||| || | |||| | || Sbjct 90781 AGGACCAGGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCC 90840 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || ||||||||||| || ||||| || ||| | | |||||||| Sbjct 90841 TCGAGTTGCTTTCCGGCGAAAATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCC 90900 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||| | ||| || || || | |||||||| Sbjct 90901 TGGATCTTGGCCTTGACGTTGTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTC 90960 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || ||||| || ||||| |||||| Sbjct 90961 TTGCCAGTTAGGGTTTTAACGAAGATTTGCATC 90993 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | |||| || || || ||||||||||||| || | |||| | || Sbjct 90553 AGGACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCC 90612 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || ||||| ||||| || ||||| || ||| | | || ||||| Sbjct 90613 TCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCC 90672 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | | | || | ||| | || ||||| || | |||||||| Sbjct 90673 TGGATCTTGGCCTTTACGTTGTCGATGGTATCAGATGACTCGACCTCAAGGGTGATGGTC 90732 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||||||| || || || || || || ||||| Sbjct 90733 TTGCCGGTCAGGGTCTTGACGAAAATTTGCAT 90764 Score = 82.4 bits (90), Expect = 5e-11 Identities = 159/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | ||| || ||||| | || || ||||| |||||||| || Sbjct 89851 AAACCACCACGAAGACGCAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCA 89910 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | || | | || |||| |||||| |||||||| || |||| ||||||||| Sbjct 89911 GCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGA 89970 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTC 34338 || | || |||||||| || ||| ||||| | || | |||| || | || Sbjct 89971 GGGATGCCTTCCTTGTCCTGAAT-TTTAGCTTTTACATTATCGATCGTGTCAGAGCTCTC 90029 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||| |||||||| || ||||| | |||||||| |||||||||||| Sbjct 90030 CACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTTTTCACGAAGATCTGCATC 90081 >seq31175 Length=13598 Score = 96.9 bits (106), Expect = 2e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || ||| || || ||||||||||||| || | |||| | || Sbjct 7456 AGGACCAGGTGGAGGGTTGATTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCC 7515 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || ||||||||||| | ||||| || ||| | | |||||||| Sbjct 7516 TCGAGTTGCTTTCCGGCGAAAATGAGAAGTTGCTGATCTGGGGGAATTCCTTCCTTGTCC 7575 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||| | ||| || || || | |||||||| Sbjct 7576 TGGATCTTGGCCTTGACGTTGTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTC 7635 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| || || ||||| || ||||| |||||| Sbjct 7636 TTGCCAGTTAGGGTTTTAACGAAGATTTGCATC 7668 >seq18711 Length=80062 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| ||||| | | ||||||| |||| || |||||| |||||||| || |||| Sbjct 40149 TCCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGC 40090 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || | || || | |||||| || |||||||| |||| ||||||||| || Sbjct 40089 GAGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGG 40030 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | | || || || || ||||| ||||| || | | || | ||| | ||| Sbjct 40029 AATTCCTTCTTTATC--CTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCA 39972 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || | || || ||||||||||||||||||||||| ||||| |||||| Sbjct 39971 ACCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCATC 39921 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||| | || || || ||| ||||| ||||||||||| | Sbjct 40377 TCCACCACGAAGACGGAGCACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCCGC 40318 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | || || || ||||| || || | ||||||||| ||| Sbjct 40317 CAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAGATTAGTCTCTGCTGGTCCGGGGG 40258 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||| || || ||||| ||| | || | || | ||||| ||| || Sbjct 40257 GATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCGGAGCTTTCCAC 40198 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||| |||||||| |||||||| ||||| ||||| Sbjct 40197 CTCTAAGGTGATGGTTTTACCGGTGAGGGTTTTCACGAAGATTTGCAT 40150 >seq3045 Length=115554 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||| || || ||||| | ||| ||||||||| ||||||||||||| Sbjct 11952 CCACCACGAAGCCTTAGGACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCA 12011 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | |||||||| ||||| || | || ||||| || ||| Sbjct 12012 AGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGCTGATCCGGGGGG 12071 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||| | | | | || | || | || || || Sbjct 12072 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGACTCCACC 12131 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||| ||||| ||||| || ||||| |||||| Sbjct 12132 TCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTAACGAAGATTTGCATC 12179 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || || || || | |||| || ||||| |||||||| || | Sbjct 11268 CCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCTGCA 11327 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || ||||| || || || || || ||||| | ||| ||||| ||| Sbjct 11328 AGAGTTCGGCCATCTTCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGGGGA 11387 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | | || | || | || || || Sbjct 11388 ATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACC 11447 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| || |||||||||||||||||||| || ||||| Sbjct 11448 TCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAAATTTGCAT 11494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322913525914880