Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq29839 174 1e-38 >seq29839 Length=13537 Score = 174 bits (192), Expect = 1e-38 Identities = 561/856 (66%), Gaps = 25/856 (3%) Strand=Plus/Minus Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 || |||||||||| ||||| || ||||||||||| || || || | || ||||| Sbjct 5144 TTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 5085 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACA--ATAGTATTTATCGCATCCCAAT--TCCAA 16059 ||||| ||||||| ||||||| ||||| |||| ||| | ||||||| ||||| Sbjct 5084 TCCATCCAATCAAACGGATTTT--GAACATTATAGATTTTGCCATATCCCAAGGCTCCAA 5027 Query 16060 CAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTAT 16119 | | | ||||| |||||||||||||| || || |||| || || | |||||||| | Sbjct 5026 CCA--ACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAAC 4969 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 | || || | || || | ||| | ||||||||| ||| || || | | Sbjct 4968 AAGAGCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTAC 4909 Query 16180 TATATCTCTTACTACA--CT-ATTTAACGGAGGGTTTAATAAGTGTTTAAACATTATACA 16236 || || || ||| | || | | || | || || | | ||| | ||| Sbjct 4908 AATCTCCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAA---TGAATACAACAAACA 4852 Query 16237 AGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACC 16296 ||||||||||||||| | ||||| || | || ||||||||||| || || | || Sbjct 4851 AGCAAAATCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCC 4792 Query 16297 TGGCATTAGTCCTCGTTTTTTAATCC--AAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 ||||||| || |||||||| | || ||||| ||| | || | ||| || ||||| Sbjct 4791 AGGCATTAACCCACGTTTTTTCAACCAGAAAATGGAGCAGAAACT--ACCTGAGAAGAAA 4734 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 || || ||||| |||||| || | | ||||| || ||| | | | || || Sbjct 4733 ATTCCCTCAACACAGGCAAACGCCAAAATACGCTCGGCGAACGAT---TCCGTGCTATCA 4677 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| ||| ||||||| || || | || |||||| | | || || ||| Sbjct 4676 ATCCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGG 4617 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || || ||| || || || || | ||||| || || | || | ||| ||||| Sbjct 4616 AACAACCGATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATC 4557 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATA-AAAGCATCTAGCTTCGGATAT 16593 || ||||| || ||||| || || || || || ||||| ||||| ||||||||| | | Sbjct 4556 TCGGAATGGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGC-TCTAGCTTCAGCAAC 4498 Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653 ||| ||||| |||| | | || | || || ||| || ||||| ||| || Sbjct 4497 TTGGACTTCTTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGC 4438 Query 16654 AAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTG-AAAGTTTTAACCAGT 16712 || || ||||| | || | || |||| ||| |||| | | ||| || ||||| Sbjct 4437 GAAGAAGGCAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTAAGGATT-CCCAGT 4379 Query 16713 CAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTT 16772 || |||| ||| | |||||| || || ||||||| || || || | || || | Sbjct 4378 GGCGAAGGTCTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCT 4319 Query 16773 TATACATTTTCCATAT 16788 | ||||| | ||| || Sbjct 4318 TGTACATCTCCCAGAT 4303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462279310212800