Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq8166 116 3e-21 seq3045 113 4e-20 seq26478 109 4e-19 seq18711 107 2e-18 seq22339 98.7 8e-16 >seq8166 Length=147256 Score = 116 bits (128), Expect = 3e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 45122 CTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCG 45181 ||||| || | || |||||| ||||||||| |||||||||||| ||| ||| | Sbjct 120233 CTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCA 120292 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || ||||| || || |||||||| || | ||||| ||||| || || | ||||||||| Sbjct 120293 TCCTCCAGCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTG 120352 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| ||| ||| |||||| | | | | || || ||| ||||| | || || Sbjct 120353 TCCTGAATCTTTGCCTTAACATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATG 120412 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| || || || || ||||| ||||| ||||| ||| Sbjct 120413 GTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCATATTG 120451 >seq3045 Length=115554 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||| || || | | || || ||||| ||||| || || Sbjct 10847 CTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCTAGTTGCTTTCCAGCAAA 10906 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| ||||| | |||||||||||| ||||||| ||| || Sbjct 10907 GATCAACCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATTTTTGCCTTCACATT 10966 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | || || ||||||||||| || || ||||| |||||||| ||||| || Sbjct 10967 GTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCCGTCAGGGTCTTAAC 11026 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 11027 AAAGATCTGCAT 11038 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||||||||||||||| || | | || || || || |||||||| || Sbjct 11075 CTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCAAGCTGCTTTCCGGCAAA 11134 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | || ||||| ||| |||||| |||||| Sbjct 11135 GATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGAATTTTCGCCTTAACATT 11194 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | || || ||| ||||| | ||| || || || || |||| |||||| || Sbjct 11195 GTCGATGGTATCGGAACTCTCGACCTCAAGGGTGATGGTTTTTCCAGTCAAAGTCTTAAC 11254 Query 45325 AAAGATTTGCAT 45336 ||||| ||||| Sbjct 11255 GAAGATCTGCAT 11266 >seq26478 Length=75715 Score = 109 bits (120), Expect = 4e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| |||||| |||||||| || ||||||||| || || |||| || || || Sbjct 13942 GTGGAGCGTGGATTCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGCTG 13883 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||||||||| ||||| ||||| |||||||| || | |||||||||||| || || Sbjct 13882 CTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTT 13823 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | | | || | ||| || || | |||||| ||||| ||||| Sbjct 13822 TGCCTTGACATTGTCAATGGTATCGGAGCTCTCGACTTCGAGGGTAATGGTCTTACCCGT 13763 Query 45313 CAGAGTCTTCACAAAGATTTGCATG 45337 || || ||||| ||||| |||||| Sbjct 13762 TAGGGTTTTCACGAAGATCTGCATG 13738 >seq18711 Length=80062 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||| ||||||||||| ||| || | || | || |||| || Sbjct 41037 GTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAACTG 40978 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 |||||| ||||| ||||||| || ||||||||||| | ||||||||||||| ||||| Sbjct 40977 TTTTCCAGCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTT 40918 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | |||| | ||| ||||||| || || ||||| || || Sbjct 40917 AGCCTTCACGTTGTCAATAGTGTCTGAGCTCTCAACCTCCAATGTTATGGTCTTTCCTGT 40858 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 | ||||| ||||| |||||||| Sbjct 40857 TAAGGTCTTTACAAATATTTGCAT 40834 >seq22339 Length=139203 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||||||||| ||||| ||||| || | | || ||| Sbjct 90100 ACCAAGTGCAAGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTTCCATCTTCC 90159 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || ||||| ||||| ||||||| ||| ||||| || || | ||||||||||| Sbjct 90160 AGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGG 90219 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | ||||| || ||| ||||| | ||| || |||||| Sbjct 90220 ATCTTAGCCTTAACGTTGTCAATGGTGTCCGAACTCTCAACCTCTAGGGTGATGGTCTTG 90279 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || || || ||||| Sbjct 90280 CCGGTCAATGTCTTGACGAAAATCTGCAT 90308 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| |||||||||||||||||| || || | | || ||||| || Sbjct 89877 GTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTG 89936 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || ||||| |||| || ||| ||||| ||||| | || ||||||||| |||||| Sbjct 89937 CTTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATTTT 89996 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | |||| | ||||||||||| ||| || ||||| || || Sbjct 89997 AGCTTTTACATTATCGATCGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCGGT 90056 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || || ||||| ||||| ||||| Sbjct 90057 CAAGGTTTTCACGAAGATCTGCAT 90080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394881406725208