Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq29839 147 2e-30 >seq29839 Length=13537 Score = 147 bits (162), Expect = 2e-30 Identities = 250/359 (70%), Gaps = 9/359 (3%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 ||||| ||||||||||||||||| || ||||||| ||| | |||||||| || ||| Sbjct 4856 AAACAAGCAAAATCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTT 4797 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAA 14319 ||||| ||||| || || |||||||| ||||| || || | ||| ||| || || || Sbjct 4796 AATCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATGG-AGCAGAAACTACCTGAGAA 4738 Query 14320 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14379 ||| ||||||||||| |||||||| | | || || | ||||| || || Sbjct 4737 GAAAATTCCCTCAACACAGGCAAACGCCAAAATACGCTCGGCGAACGA-----TTCCGTG 4683 Query 14380 CGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14437 | || ||||| ||| ||||| |||| || || || | | | | ||||||||| Sbjct 4682 CTATCAATCCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATA 4623 Query 14438 GCATTAAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14497 ||| || || | | |||||| || | | || || || || |||| || | || Sbjct 4622 GCACGGAACAACCGATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTG 4563 Query 14498 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14556 ||||| || || || ||||| || || || || || || ||||| ||| ||||||||| Sbjct 4562 TACATCTCGGAATGGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTC 4504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482102931928640