Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13]
40,248 sequences; 321,046,825 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq3045 95.1 9e-15
>seq3045
Length=115554
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158
|| || || || || || || | |||||| ||||||||||| || ||||||||||||||
Sbjct 11952 CCACCACGAAGCCTTAGGACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGGCA 12011
Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218
| ||| | ||| || | ||| ||||| || |||| | | ||| |||||| |||
Sbjct 12012 AGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGCTGATCCGGGGGG 12071
Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278
| ||||||||||| || | ||| || | | | |||||| || |||
Sbjct 12072 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGACTCCACC 12131
Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|| | ||||||| | ||||| || | ||||| || || ||||||||
Sbjct 12132 TCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTAACGAAGATTTGCAT 12178
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182
|| || || || || || || |||||||| || || | ||| | |||||||||||||
Sbjct 11292 TGGAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGGCCATCTTCCAATTGT 11351
Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242
|| || ||| |||| ||||| ||||| || ||| | |||||||| || ||| |
Sbjct 11352 TTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGGGGAATACCTTCCTTGTCTTGAATCTTG 11411
Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302
||| || | ||| ||||| | ||| || | ||||||| | || |||||
Sbjct 11412 GCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTCTTTCCGGTG 11471
Query 18303 AATGTTTTTACAAAAATTTGCAT 18325
| ||||| ||||||||||||||
Sbjct 11472 AGAGTTTTCACAAAAATTTGCAT 11494
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379157923232760
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |