Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq29839 188 6e-43 seq3045 105 6e-18 seq18711 98.7 9e-16 seq22339 96.9 3e-15 seq14089 86.0 6e-12 seq31175 82.4 7e-11 >seq29839 Length=13537 Score = 188 bits (208), Expect = 6e-43 Identities = 581/884 (66%), Gaps = 31/884 (4%) Strand=Plus/Plus Query 57545 CATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTT 57604 |||||| || ||| | ||||| | || ||| | |||||||| || || ||||| || || Sbjct 4278 CATGTTCCCAATTCATTATCCTCAAATCTGGGAGATGTACAAGAAAGCCGAAGCCTCCTT 4337 Query 57605 TTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGA 57664 ||||| | ||| ||||| || || || | || || || | ||||| ||| | | Sbjct 4338 CTGGACTGCCGAGGAAGTCGATCTCTCACAAGACCTTCGCCACTGGGAATCCTTAACT-- 4395 Query 57665 ATCTGA-GAGAAA--TTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTAT 57721 ||||| |||||| ||| || | || || | || || ||||| || || ||||| || Sbjct 4396 -TCTGACGAGAAACATTTCATCACTCATGTCCTTGCCTTCTTCGCTGCTTCTGATGGCAT 4454 Query 57722 TGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATG 57781 ||| |||||| | | || | | || ||||||| ||||| | || || ||| | Sbjct 4455 CGTTTTGGAGAATCTCGCCGGACGGTTCATGAAAGAAGTCCAAGTTGCTGAAGCTAGA-G 4513 Query 57782 CTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCA 57840 |||| || ||||| ||| | ||||| || ||| | ||||| || ||||| || ||| Sbjct 4514 CTTTCTATGGATTCCAAATTGCCATCGAGAACATCCATTCCGAGATGTACAGTCTTCTCC 4573 Query 57841 TCGATACGTACGTGAAGGA--CAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAAC 57898 | || || || | || | ||| ||||||| | | ||||| || || ||||| Sbjct 4574 TTGAAACCTATATCAAAAATTCAA--ACGAGAAGAATCGGTTGTTCCGTGCTATTGAAAC 4631 Query 57899 AATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGC 57958 | ||| || |||||||| || ||| | | || ||||| | ||| |||| Sbjct 4632 TGTCCCCTGTGTCAAGAAGAAGGCTGATTGGGCGTTAAAGTGGATTGATAGC---ACGGA 4688 Query 57959 CACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAG 58018 ||||||||||| | | | ||||| ||| || || || || ||||| || || || Sbjct 4689 ATCGTTCGCCGAGCGTATTTTGGCGTTTGCCTGTGTTGAGGGAATTTTCTTCTCAGGTAG 4748 Query 58019 CTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCA 58077 || ||| | || || ||| |||| ||||| || | ||||| || | ||||| | Sbjct 4749 TTTCTGC-TCCATTTTCTGGTTGAAAAAACGTGGGTTAATGCCTGGATTAACGTTCTCAA 4807 Query 58078 ACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTC 58137 |||||||||| || || || || || || ||| ||||||||| || | |||| | Sbjct 4808 ACGAGTTGATTTCACGAGATGAAGGGCTTCATTGTGATTTTGCTTGTTTGTTGTATT--- 4864 Query 58138 ACATTGT----CAATAAACCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTC 58193 |||||| || ||| || |||||| | ||| ||| | || ||||| || Sbjct 4865 -CATTGTTGAGGAAGAAATTGAGTGAGGATCGAGTGAGGGAGATTGTAACAGAGGCCGTT 4923 Query 58194 GCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAAT 58253 | || |||| || ||||| || || | |||||||| | | || ||||| Sbjct 4924 GATATAGAAAGGGAATTTGTGTGTGATGCTTTGCCGGTGGCTCTTGTTGGAATGAATGGG 4983 Query 58254 GATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGA 58313 || |||||| | ||||| || ||||| || || || ||| | | | | ||| Sbjct 4984 GACTTGATGAGCCAATACATAGAATTTGTGGCAGATAG---GTTGGTTGGAGCCTTGGGA 5040 Query 58314 GA--GCGTCAT-TACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAG 58370 | || || || || ||||||||||||||| ||| | |||| ||| | || Sbjct 5041 TATGGCAAAATCTATAATGTTCAAAATCCGTTTGATTGGATGGAGTTGATTTCGTTGCAG 5100 Query 58371 GGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 || ||||| || || || || |||| ||| | |||||||| || Sbjct 5101 GGGAAGACTAATTTCTTTGAGAAAAGAGTCGGTGAATATCAGAA 5144 >seq3045 Length=115554 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| ||||| || || || || || |||||| | || || || |||| Sbjct 11723 CATGCAAATCTTCGTCAAGACCCTTACCGGAAAGACCATCACCCTTGAGGTGGAGTCGTC 11664 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | | || | || || | || ||| |||||||| | || || ||||| Sbjct 11663 CGACACTATTGATAACGTGAAGGCCAAGATCCAGGATAAGGAAGGTATCCCCCCAGACCA 11604 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | | ||||| || || || ||||||||||| || | |||||| || Sbjct 11603 GCAGAGATTGATATTTGCCGGAAAGCAGTTGGAAGATGGGCGAACCCTTGCCGATTACAA 11544 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| || ||||| ||||||||||| || || Sbjct 11543 CATTCAGAAGGAATCCACTCTTCATCTTGTCCT 11511 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || || || || || || || |||||| |||| || || | || Sbjct 11951 CATGCAAATCTTCGTCAAAACCCTTACCGGGAAGACAATCACCCTCGAGGTGGAGTCCTC 11892 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || ||| | || |||||||||||| | || |||||||| Sbjct 11891 CGACACCATTGACAACGTAAAAGCCAAGATCCAGGACAAGGAAGGAATTCCCCCCGACCA 11832 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||||| || |||||||| || || | || ||| || | ||| || || Sbjct 11831 GCAACGTCTCATCTTCGCTGGAAAGCAACTTGAGGACGGCCGAACCCTTGCCGACTACAA 11772 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| ||||| || || || || Sbjct 11771 TATCCAGAAGGAATCAACTCTCCACCTCGTGCT 11739 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||||||||| || || ||||| || || || || |||||| | || ||||| | || Sbjct 11495 CATGCAAATTTTTGTGAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTC 11436 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | || || | || ||||||||||| | || || ||||| Sbjct 11435 AGACACAATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCA 11376 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | || || || ||||| ||||| |||||||| ||| | ||||| || Sbjct 11375 ACAGAGACTCATCTTTGCTGGGAAACAATTGGAAGATGGCCGAACTCTTGCAGATTACAA 11316 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || || || ||||| ||||| || Sbjct 11315 CATCCAGAAGGAGTCTACTCTCCATCTTGT 11286 >seq18711 Length=80062 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || ||||| || |||||||| || ||| | || |||||| || Sbjct 39922 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTTGAAAGTTCT 39981 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || || | ||| ||| || ||||| | || || |||||| Sbjct 39982 GATACTATTGACAATGTAAAGGCCAAAATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 40041 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || |||||||| || ||| | || || | || | |||||||||| Sbjct 40042 CAGAGGCTTATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 40101 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||||||||| || || ||| |||| || Sbjct 40102 ATACAAAAAGAATCAACCCTACATTTGGTGCT 40133 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| | || || ||||| || || | || ||||| || Sbjct 40606 ATGCAAATTTTTGTGAAGACCTTAACCGGAAAAACAATTACTTTGGAAGTTGAGAGTTCA 40665 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | |||| |||| | || | || ||| || || ||||| | || || ||||| Sbjct 40666 GATACTATCGACAACGTTAAAGCTAAG-ATACAAGATAAAGAAGGGATCCCACCAGACCA 40724 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| | |||| |||||||| || || ||||| || | |||| | ||| ||||| Sbjct 40725 ACAGAGGTTAATTTTCGCTGGGAAGCAATTGGAGGATGGCAGGACTCTAGCCGACTATAA 40784 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| ||||||||||| || |||| || Sbjct 40785 TATTCAAAAGGAATCGACTCTCCACTTGGTGCT 40817 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || |||||||| | ||||| || || || || | || ||||| || Sbjct 40834 ATGCAAATATTTGTAAAGACCTTAACAGGAAAGACCATAACATTGGAGGTTGAGAGCTCA 40893 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | ||| ||||||||| || | || ||||||||| Sbjct 40894 GACACTATTGACAACGTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCCGACCAG 40953 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | | || |||||||| ||||||||||| || | | | || || |||||| || Sbjct 40954 CAAAGGTTGATTTTCGCTGGAAAACAGTTGGAGGA-TGGACGTACATTGGCCGATTACAA 41012 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||||| || || || || || || || ||| Sbjct 41013 CATTCAAAAGGAGTCCACCCTCCACCTTGTCCTT 41046 >seq22339 Length=139203 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| ||||| || ||||| |||||| |||| |||||| | || Sbjct 90536 ATGCAGATTTTCGTTAAGACCCTGACCGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 90477 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | ||||| || ||| | |||||||||||| | || || ||||| Sbjct 90476 GATACCATCGATAACGTCAAGGCAAAGA-TCCAGGACAAGGAAGGAATTCCCCCAGACCA 90418 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 || | || || ||||| || || || || |||||| | || | ||||| || Sbjct 90417 ACAAAGACTCATCTTCGCCGGGAAGCAATTAGAAGACGGTCGTACCCTTGCTGATTACAA 90358 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || || || ||||| || || || || Sbjct 90357 CATCCAGAAGGAGTCGACCCTCCACCTTGT 90328 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || |||| || || || |||||| | || || || || Sbjct 90080 ATGCAGATCTTCGTGAAAACCTTGACCGGAAAGACCATCACCTTGGAGGTGGAGAGCTCT 90021 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| ||||||||||||| | || || |||||| Sbjct 90020 GACACGATCGATAATGTAAAAGCTAAAATTCAGGACAAGGAAGGCATCCCTCCGGACCAG 89961 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| |||| || | |||| | ||||| ||| Sbjct 89960 CAGAGGCTGATCTTCGCAGGGAAGCAGCTGGAGGATGGAAGGACTCTCGCTGATTACAAC 89901 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || ||||| || || || Sbjct 89900 ATTCAGAAGGAGTCCACCCTTCACCTCGTCCT 89869 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| || || || || ||||| || |||||| | || ||||| |||| Sbjct 90992 ATGCAAATCTTCGTTAAAACCCTAACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 90933 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | ||||| | || |||||||||||| | || || || ||| Sbjct 90932 GATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 90873 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| || || || | || || || || ||| || ||| Sbjct 90872 CAACGTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGTACGTTGGCCGACTACAAC 90813 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||| ||||| || || || ||||| || Sbjct 90812 ATCCAAAAGGAATCAACCCTCCACCTGGTCCT 90781 Score = 82.4 bits (90), Expect = 7e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||||||||| ||||| ||||| ||||| || |||||| | || || || | || Sbjct 90765 CATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCATC 90706 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||| | || || | || |||||| ||||| | || || || || Sbjct 90705 TGATACCATCGACAACGTAAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCA 90646 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||||| || ||||| || || || | || || || || ||| || || Sbjct 90645 GCAACGTCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCGTACGTTGGCCGACTACAA 90586 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| ||||| || || ||||| || ||||| || Sbjct 90585 CATCCAAAAGGAGTCTACTCTCCACCTGGTCCT 90553 >seq14089 Length=105206 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 |||||||||||| | || || ||||||||| | |||| || ||||| || || ||||| Sbjct 70691 GGACAAGGAAGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGA 70632 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | || | |||||||||||| ||||| ||||| || ||||| |||| | Sbjct 70631 AGATGGTCGAACGCTTGCCGATTATAACATCCAAAAGGAATCAACCCTTCACTTGGTCTT 70572 Query 31405 TAGACTGAGGGGCGGTA 31421 || || ||||| |||| Sbjct 70571 GAGGCTTAGGGGAGGTA 70555 >seq31175 Length=13598 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||||| || || || || ||||| || |||||| | || ||||| || Sbjct 7670 AAGATGCAAATCTTCGTTAAAACCCTAACTGGCAAGACCATCACCCTTGAGGTTGAGTCG 7611 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | ||||| | || |||||||||||| | || || || Sbjct 7610 TCTGATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGAT 7551 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| | ||| || ||||| || || || | || || || || ||| || Sbjct 7550 CAGCAACTTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGTACGTTGGCCGACTAC 7491 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| ||||| || || || ||||| || Sbjct 7490 AACATCCAAAAGGAATCAACCCTCCACCTGGTCCT 7456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445542134924160