Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq29839 248 1e-60 seq9269 89.7 6e-13 >seq29839 Length=13537 Score = 248 bits (274), Expect = 1e-60 Identities = 606/911 (67%), Gaps = 18/911 (2%) Strand=Plus/Minus Query 33291 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33350 || || |||||||| || | ||| || || |||||||| || || | ||| || || Sbjct 5144 TTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 5085 Query 33351 TCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATC 33410 ||||| ||||||||||||| |||||| || ||||| | ||||||| | || | Sbjct 5084 TCCATCCAATCAAACGGATTTTGAACATTATAGATTTTGCCATATCCCAAGGCTCCAACC 5025 Query 33411 AATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGT 33470 || |||||||| || |||||||| ||| |||||| || | ||||||||| | || Sbjct 5024 AACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAAGA 4965 Query 33471 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATA 33530 || || | ||| || | |||||| ||| || || || | ||||| ||| Sbjct 4964 GCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAATC 4905 Query 33531 AATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAA-ACATCAAACATGCGAA 33589 || || || |||||| | | | | || | || ||| |||||| || || Sbjct 4904 TCCCTCACTCGATCCTCACTCAATTTCT-TCCTCAACAATGAATACAACAAACAAGCAAA 4846 Query 33590 ATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCAT 33649 ||| || || || || || |||| ||| || ||||| || ||||| | ||| ||||| Sbjct 4845 ATCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCAT 4786 Query 33650 TAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTC 33709 || ||||| ||||| | ||| || ||||| ||| || || ||||| ||||| || Sbjct 4785 TAACCCACGTTTTTTCAACCAGAAAATGGAGCAGAAACTACCTGAGAAGAAAATTCCCTC 4726 Query 33710 TACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATGTATCCACT 33765 || ||||| || | || | ||| | ||| | | ||| ||| ||||||| Sbjct 4725 AACACAGGCAAACGCCAAAATACGCTCGGC-GAACGATTCCGTGCTATCA---ATCCACT 4670 Query 33766 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33825 || |||||||| |||||||| || ||||| || | ||||| || ||| || | Sbjct 4669 TTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACC 4610 Query 33826 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33885 || || || || || ||| | ||| || || | | |||||| ||||| || |||| Sbjct 4609 GATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATCTCGGAAT 4550 Query 33886 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 33945 | ||||| || ||||| || || ||||| |||||| |||||| || | || || |||| Sbjct 4549 GGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGGACTT 4490 Query 33946 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACG 34005 || | || ||| | || | ||| || || || |||||| || || || || | Sbjct 4489 CTTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAGAAGG 4430 Query 34006 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG---- 34061 | | ||||| | || |||| ||| ||||| | |||| ||||| || || Sbjct 4429 CAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTA-AGGATTCC---CAGTGGCGA 4374 Query 34062 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 34121 | |||| || | ||| ||||| || | ||||| || || || || || || || ||| Sbjct 4373 AGGTCTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTAC 4314 Query 34122 ATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGTGCA 34181 || | |||||| | | |||| || |||||||| || || | || || || || || Sbjct 4313 ATCTCCCAGATTTGAGGATAATGAATTGGGAACATGCAGAAGCGATCGGGGTTGGGGGCG 4254 Query 34182 AGGATAGGTTC 34192 |||| ||| || Sbjct 4253 AGGAGAGGCTC 4243 >seq9269 Length=8543 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63663 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63722 ||||| | ||||| | ||| |||||||| || |||||||| || ||| | | | | Sbjct 7582 GTTCCAGAGTTAAAAAGGGTGGGAGAAGCATGAGTAAACCAACGTTGAGACATTGTGTGG 7523 Query 63723 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63781 || || | |||||| || || ||||| | ||| ||||| || || || || | |||||| Sbjct 7522 TAAGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTAA 7464 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||| || || || ||||||| || | | || || | ||| || |||||| Sbjct 7463 CATGTGTTGGGGCCTCTCAACAACCTTCCCCTGAACCTTTAAGAGGTATGACCTTTCCAG 7404 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 ||||| || ||||| ||| || |||||| || || || || || Sbjct 7403 GGTTTTGAAGCCAAAGAAGTCATAATCAAAGTCACGGTCATATATGAT 7356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629500738765440