Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq29839 158 1e-33 seq9269 104 2e-17 >seq29839 Length=13537 Score = 158 bits (174), Expect = 1e-33 Identities = 562/871 (65%), Gaps = 8/871 (1%) Strand=Plus/Minus Query 11338 CTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 ||| |||||||||| |||| | || || ||||||||||| || | | || || | Sbjct 5145 CTTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAA 5086 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 |||||| | ||| ||||| | ||||| ||| ||| || | || || || | Sbjct 5085 CTCCATCCAATCAAACGGATTTTGAACATTATAGATTTTGCCATATCCCAAGGCTCCAAC 5026 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 || |||||||| || |||||||| || || ||| || | |||||| || | ||| Sbjct 5025 CAACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAAG 4966 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATTAT 11577 | ||||||| | |||| | || ||| ||| ||||||||| ||| || || | | || Sbjct 4965 AGCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAAT 4906 Query 11578 CGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAA-ACATTAAACACGCAA 11636 | | | | |||| | | | | | || | || ||| ||||| |||| Sbjct 4905 CTCCCTCACTCGATCCTCACTCAATTTCT-TCCTCAACAATGAATACAACAAACAAGCAA 4847 Query 11637 AATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA 11696 |||||||||| | ||||| |||| || | || || || || |||||||| |||| Sbjct 4846 AATCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCA 4787 Query 11697 TCAATCCTCGtttttttATCC--AAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 | || || |||||||| | || ||||| ||||| || | ||| || ||||| ||||| Sbjct 4786 TTAACCCACGTTTTTTCAACCAGAAAATGGAGCAGAAACT--ACCTGAGAAGAAAATTCC 4729 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTGCTAGATATCCATTT 11814 ||| ||| ||||| || | | | || | | | ||||| ||||| || Sbjct 4728 CTCAACACAGGCAAACGCCAAAATACGCTCGGCGAACGATTCCGTGCTATCAATCCACTT 4669 Query 11815 TCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATG 11874 | ||||||||||| ||||| || || || | ||||| ||||| || || | Sbjct 4668 TAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACCG 4609 Query 11875 CATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATG 11934 | || || | || | | | ||| || || | | | ||| ||||| || ||||| Sbjct 4608 ATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATCTCGGAATG 4549 Query 11935 AATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 || || || || || ||||| |||||||||||| || || || | | || || || Sbjct 4548 GATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGGACTTC 4489 Query 11995 -CACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATG 12053 ||| || | | | || | |||||| || || |||||| || || || || | Sbjct 4488 TTTCAT-GAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAGAAGG 4430 Query 12054 CTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAAT 12113 | || | ||| | || || | ||| ||||| |||||| ||||| | | | Sbjct 4429 CAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTAAGGATTCCCAGTGGCGAAGGT 4370 Query 12114 CTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTT 12173 ||| ||| | ||| ||||| || | ||||| || || | | || || ||||| | Sbjct 4369 CTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTACATCT 4310 Query 12174 TCCAGATATCATGATACTTAATAGGGAAAAT 12204 |||||| | | |||| | ||| ||||| || Sbjct 4309 CCCAGATTTGAGGATAATGAATTGGGAACAT 4279 >seq9269 Length=8543 Score = 104 bits (114), Expect = 2e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 38171 CACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATAC 38230 ||||||| |||| || ||||| | | || | ||| | | | | |||||| || || | Sbjct 7942 CACCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCC 7883 Query 38231 CATTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCG 38290 |||||||| | || ||| | || |||||| | ||| | || || ||||| || | Sbjct 7882 CATTAGATGTCCCATTTGTTCCACGAATATAACTGCCCATGGCACGGATATTGTGGATGG 7823 Query 38291 ACAATCCTATTCCACCTGCATGTTTTGATATTAA-AGCGCATTGTTTTAACGTATCAAAT 38349 | | || || ||||| || || ||| || ||| ||| |||| |||||| |||||| || Sbjct 7822 AAACACCAATACCACCAGC-TGACTTGCTAATAACAGCACATTCTTTTAAGGTATCATAT 7764 Query 38350 ATACCTTCTATACTGTCATCCTTTAT 38375 || ||||||||||| |||||||| || Sbjct 7763 ATTCCTTCTATACTATCATCCTTCAT 7738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468289085173120