Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq29839 255 8e-63 seq9269 98.7 1e-15 >seq29839 Length=13537 Score = 255 bits (282), Expect = 8e-63 Identities = 586/875 (67%), Gaps = 18/875 (2%) Strand=Plus/Minus Query 35867 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 35926 || || |||||||| || | ||| || || |||||||| || || | || || || Sbjct 5144 TTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 5085 Query 35927 TCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATC 35986 ||||| |||| || ||||| ||||||||| ||||| | ||||||| | || | Sbjct 5084 TCCATCCAATCAAACGGATTTTGAACATTATAGATTTTGCCATATCCCAAGGCTCCAACC 5025 Query 35987 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 36046 || |||||||| ||||||||||| ||| |||||| || | ||||||||| | ||| Sbjct 5024 AACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAAGA 4965 Query 36047 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 36106 || || | ||| || | |||||| ||| ||| || || ||||||| ||| Sbjct 4964 GCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAATC 4905 Query 36107 GATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 | ||| || |||||| | | | || | | ||| |||||| || ||| Sbjct 4904 TCCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAA 4845 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 || || || || || || |||| ||| || ||||| || ||||| | ||| |||||| Sbjct 4844 TCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCATT 4785 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCAGAAAAGAAAATTCCTTC 36285 | ||||| ||||| | ||| || ||||| ||| | | || || ||||||||||| || Sbjct 4784 AACCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAACTACCTGAGAAGAAAATTCCCTC 4726 Query 36286 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCACTGTCATGTATCCACT 36341 || ||||| || | || | ||| | ||| | | || ||| ||||||| Sbjct 4725 AACACAGGCAAACGCCAAAATACGCTCGGC-GAACGATTCCGTGCTATCA---ATCCACT 4670 Query 36342 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 36401 || |||||||| |||||||| || ||||| || | || || |||||| || | Sbjct 4669 TTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACC 4610 Query 36402 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 36461 || || || || || ||| | ||| || |||| | |||||| ||||| || |||| Sbjct 4609 GATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATCTCGGAAT 4550 Query 36462 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 36521 | ||||| || ||||| ||||| ||||| |||||| |||||| || | || || |||| Sbjct 4549 GGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGGACTT 4490 Query 36522 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 36581 || | || ||| | || | ||| || || || || ||| || || || || | Sbjct 4489 CTTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAGAAGG 4430 Query 36582 CCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG---- 36637 | | ||||| | || |||| ||| |||| | |||| ||||| || || Sbjct 4429 CAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTA-AGGATTCC---CAGTGGCGA 4374 Query 36638 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 36697 | |||| || | ||| ||||| || | ||||| || || || || || || || ||| Sbjct 4373 AGGTCTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTAC 4314 Query 36698 ATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || | |||||| | | |||| |||||||| || || Sbjct 4313 ATCTCCCAGATTTGAGGATAATGAATTGGGAACAT 4279 >seq9269 Length=8543 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||| ||||| | |||| ||| || | ||| |||| | || ||| || | ||| ||| Sbjct 7940 CCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCCA 7881 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||| ||||| || || ||||| || || | ||||| ||||| || || Sbjct 7880 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCCATGGCACGGATATTGTGGATGGAA 7821 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || || || || || | || ||| |||||| |||||||| || Sbjct 7820 ACACCAATACCACCAGCTGACTTGCTAATAACAGCACATTCTTTTAAGGTATCATATATT 7761 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 66437 || ||||||||||||||| ||||| | || ||||||||| Sbjct 7760 CCTTCTATACTATCATCCTTCATGCATACAAGGAAACAGCTA 7719 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| | ||||| | ||| |||||||| || |||||||| || ||| | | | | Sbjct 7582 GTTCCAGAGTTAAAAAGGGTGGGAGAAGCATGAGTAAACCAACGTTGAGACATTGTGTGG 7523 Query 66516 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 66574 || || | |||||| || || ||||| | ||| ||||| || || || || | |||||| Sbjct 7522 TAAGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTAA 7464 Query 66575 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 66634 |||||| || || || ||||| | ||| | | || || | ||| || |||||| Sbjct 7463 CATGTGTTGGGGCCTCTCAACAACCTTCCCCTGAACCTTTAAGAGGTATGACCTTTCCAG 7404 Query 66635 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||| || ||||| ||| || |||||| || || || || || Sbjct 7403 GGTTTTGAAGCCAAAGAAGTCATAATCAAAGTCACGGTCATATATGAT 7356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657841673264320