Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq29839 91.5 1e-13 >seq29839 Length=13537 Score = 91.5 bits (100), Expect = 1e-13 Identities = 256/388 (66%), Gaps = 4/388 (1%) Strand=Plus/Plus Query 22796 CCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGA 22855 |||| |||||| |||| |||||| | | ||||| || || |||| || |||||||||| Sbjct 4757 CCATTTTCTGGTTGAAAAAACGTGGGTTAATGCCTGGATTAACGTTCTCAAACGAGTTGA 4816 Query 22856 TTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAA 22915 || || || ||||| || || ||||| ||||||||| || ||| | || | Sbjct 4817 TTTCACGAGATGAAGGGCTTCATTGTGATTTTGCTTGTTTGTTGTATTCATTGTTGAGGA 4876 Query 22916 ACAAACCGTGTCAGGA-CGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACG 22974 | ||| | || |||| ||| | | || || | || |||||||| || || | | Sbjct 4877 AGAAATTGAGTGAGGATCGA-GTGAGGGAGATTGTAACAGAGGCCGTTGATATAGAAAGG 4935 Query 22975 GCTTTCTTCCAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGA 23034 | || | || || | | | || |||| |||||| | ||| ||||| Sbjct 4936 GAATTTGTGTGTGATGCTTTGCCGGTGGCTCTTGTTGGAATGAATGGGGACTTGATGAGC 4995 Query 23035 CTGTACATACAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTAT 23094 | |||||| | ||||| |||||| | || | | ||| |||| |||| || || ||| Sbjct 4996 CAATACATAGAATTTGTGGCAGATAGGTTGGTTGGAGCCTTGGGATATGGCAAAATCTAT 5055 Query 23095 AACGTTGCCAATCCATTTGATTTCATGGATAACATTAGCATTG-AAGGTAAAACAAACTT 23153 || ||| ||||| ||||||| ||||| ||| | ||| | || || || || || Sbjct 5056 AATGTTCAAAATCCGTTTGATTGGATGGAGTTGATT-TCGTTGCAGGGGAAGACTAATTT 5114 Query 23154 CTTTGAACGCCGTGTGAGTGAATATCAG 23181 |||||| | || ||||||||||| Sbjct 5115 CTTTGAGAAAAGAGTCGGTGAATATCAG 5142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356058859403944