Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq22339 104 2e-17 seq3045 102 8e-17 seq18711 93.3 4e-14 seq21318 91.5 1e-13 >seq22339 Length=139203 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 |||||||| ||||| ||||| || ||| || || | || ||||| || || || Sbjct 90568 GTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCG 90627 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| |||||||||||||| || || || ||||||||||| ||| || ||| Sbjct 90628 GCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTT 90687 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | || || | | ||| ||||||| ||| | ||||||||||||| || Sbjct 90688 ACGTTGTCGATGGTATCAGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 90747 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 90748 TTGACGAAAATTTGCAT 90764 >seq3045 Length=115554 Score = 102 bits (112), Expect = 8e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 ||| || || || || ||||| |||| ||||||||||| ||||| || || ||||| || Sbjct 11795 GTCCTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCGGGGGGAATTCCTTCCTT 11854 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || ||||| | || | ||||||| || ||||||||| | ||| | Sbjct 11855 GTCCTGGATCTTGGCTTTTACGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGAT 11914 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||||| | ||||| ||||| |||||||| Sbjct 11915 TGTCTTCCCGGTAAGGGTTTTGACGAAGATTTGCAT 11950 >seq18711 Length=80062 Score = 93.3 bits (102), Expect = 4e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || | ||||| || ||||| |||||||| || || ||| Sbjct 40604 CCACCACGAAGACGCAGCACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGCT 40545 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || | ||||||||||| || || || |||||| | |||||| || || || Sbjct 40544 AGTGTCCGTCCA-TCTTCGAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGG 40486 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || ||||||||||| ||| | || | ||| | | || | |||||| | | || | Sbjct 40485 AATACCTTCTTTGTC-TTGAATCTTAGCTTTGACATTGTCGATTGTGTCTGAGCTTTCAA 40427 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | || | ||||| || || | |||||| || || |||||||| Sbjct 40426 CCTCTAGTGTAATAGTCTTCCCCGTAAGCGTTTTGACAAAAATTTGCAT 40378 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGC-TCGAGTCTTCGAGCTGTTTACC 139626 || ||||| ||||||||||| |||||| || ||| | || | || || | |||||| || Sbjct 41030 GTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCA-TCCTCCAACTGTTTTCC 40972 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 ||| | |||| | |||||| |||||||| || || || ||||| |||||| || Sbjct 40971 AGCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTT 40912 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| ||||| | || | ||||| || || || || Sbjct 40911 CACGTTGTCAATAGTGTCTGAGCTCTCAACCTCCAATGTTATGGTCTTTCCTGTTAAGGT 40852 Query 139747 TTTTACGAATATTTGCAT 139764 ||||| ||||||||||| Sbjct 40851 CTTTACAAATATTTGCAT 40834 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || |||||||| | || || || | || || |||||||| |||||||||||| Sbjct 40148 CCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 40089 Query 139598 ATTGTGCTCGA--GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | | | |||| || |||||||| || ||||| | || || | ||||| || |||| Sbjct 40088 A--GGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAG 40031 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 | || |||||||| || ||| |||| | |||| | || | || || | || Sbjct 40030 GAATTCCTTCTTTATC-CTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCA 39972 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||||| ||| | || |||||||| | ||||| ||||| |||||||| Sbjct 39971 ACCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 >seq21318 Length=12341 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATC-GCT 139596 || || || || || | || || || | ||| || || ||||||||||||||||| ||| Sbjct 4746 CCACCACGCAATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCTGCT 4805 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || || |||||| ||||| ||||||||| | |||| | || || || || || Sbjct 4806 -AGAGTCCTGCCGTCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGG 4864 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 ||||| || || || ||| || ||| | | || | ||| || | | |||||| Sbjct 4865 AATGCCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTCCAC 4924 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | || ||||| ||||| ||||| || || || |||||| Sbjct 4925 TTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTCACAAAAATCTGCATA 4973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495814430201600