Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq29839 253 3e-62 seq9269 93.3 6e-14 >seq29839 Length=13537 Score = 253 bits (280), Expect = 3e-62 Identities = 585/873 (67%), Gaps = 14/873 (2%) Strand=Plus/Minus Query 49669 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 49728 || || |||||||| || | ||| || || |||||||| || || | ||| || || Sbjct 5144 TTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 5085 Query 49729 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 49788 ||||| ||||||||||||| ||||||||| ||||| | ||||||| | || | Sbjct 5084 TCCATCCAATCAAACGGATTTTGAACATTATAGATTTTGCCATATCCCAAGGCTCCAACC 5025 Query 49789 AATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 49848 || ||||| || ||||||||||| ||| |||||| || | ||||||||| | ||| Sbjct 5024 AACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAAGA 4965 Query 49849 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 49908 || || | ||| || | |||||| ||| || || || ||||||| ||| Sbjct 4964 GCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAATC 4905 Query 49909 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 49968 || || || |||||| | | | || | | ||| |||||| || ||| Sbjct 4904 TCCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAA 4845 Query 49969 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 50028 || || || || || || |||| ||| | ||||| || ||||| | ||| |||||| Sbjct 4844 TCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCATT 4785 Query 50029 AGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAAGATTCCTTC 50087 | ||||| ||||| | ||| || ||||| ||| || || || ||||| ||||| || Sbjct 4784 AACCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAACTACCTGAGAAGAAAATTCCCTC 4726 Query 50088 TACTGCGGCAAAGGCAACAAGTCTCTCTCCATAAC--TGGCGCTGTCATGTATCCACTTT 50145 || |||||| || | || | ||| | ||| | || || || ||||||||| Sbjct 4725 AACACAGGCAAACGCCAAAATACGCTCGGC-GAACGATTCCG-TGCTATCAATCCACTTT 4668 Query 50146 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 50205 |||||||| |||||||| || ||||| || | ||||| || ||| || | Sbjct 4667 AACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACCGA 4608 Query 50206 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 50265 || || || || || ||| | ||| || || | | |||||| ||||| || ||||| Sbjct 4607 TTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATCTCGGAATGG 4548 Query 50266 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 50325 ||||| || ||||| || || ||||| |||||| |||||| || | || || |||||| Sbjct 4547 ATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGGACTTCT 4488 Query 50326 GTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 50385 | || ||| | || | ||| || || || || ||| || || || || || Sbjct 4487 TTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAGAAGGCA 4428 Query 50386 AATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTG----AT 50441 | ||||| | || |||||||| |||| | |||| ||||| || || | Sbjct 4427 AGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTA-AGGATTCC---CAGTGGCGAAG 4372 Query 50442 ATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACAT 50501 |||| || | ||| ||||| || | ||||| || || || || || || || ||||| Sbjct 4371 GTCTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTACAT 4312 Query 50502 ATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 | |||||| | | |||| || |||||||| || Sbjct 4311 CTCCCAGATTTGAGGATAATGAATTGGGAACAT 4279 >seq9269 Length=8543 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | ||||| | ||| |||||||| || |||||||| || ||||| | | | Sbjct 7582 GTTCCAGAGTTAAAAAGGGTGGGAGAAGCATGAGTAAACCAACGTTGAGACATTGTGTGG 7523 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | |||||| || || ||||| | ||| ||||| || || || || | |||||| Sbjct 7522 TAAGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTAA 7464 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||| || || || ||||| | ||| | | || || | ||| || |||||| Sbjct 7463 CATGTGTTGGGGCCTCTCAACAACCTTCCCCTGAACCTTTAAGAGGTATGACCTTTCCAG 7404 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 ||||| || ||||| ||| || |||||| || || || || || Sbjct 7403 GGTTTTGAAGCCAAAGAAGTCATAATCAAAGTCACGGTCATATATGAT 7356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 717907438966720